FC930758

Overview
NameFC930758
Unique NameFC930758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.815e-77
Identity = 146/183 (79.78%), Postives = 161/183 (87.98%), Query Frame = 1
Query:  157 NDDFRSNGFYGSGYLGPQFQLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +DD  S+    S  L   F    RGFSS S++P ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LAN+VDLGSLRDPQQDAERVKNPEWLVV+GVCTH
Sbjct:   21 SDDDSSSPRSISPSLASVFLHHTRGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTH 203          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.896e-77
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 1
Query:  199 LGPQFQLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            L  QF    RGFSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEEDI LAN+VDLGSLRDPQQDAERVKNPEWLVV+GVCTH
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTH 213          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.536e-76
Identity = 141/169 (83.43%), Postives = 155/169 (91.72%), Query Frame = 1
Query:  199 LGPQFQLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            L  QF    RGFSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT+EDI LAN+VDLGSLRDPQQDAERVKNPEWLVV+GVCTH
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTH 213          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.470e-76
Identity = 144/183 (78.69%), Postives = 160/183 (87.43%), Query Frame = 1
Query:  157 NDDFRSNGFYGSGYLGPQFQLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +DD  S+    S  L   F    RGFSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LAN+VDLGSLRDPQQDAERVK+PEWLVV+GVCTH
Sbjct:   35 SDDDSSSPRSISPSLASVFLHHTRGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTH 217          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.218e-75
Identity = 138/160 (86.25%), Postives = 152/160 (95.00%), Query Frame = 1
Query:  226 RGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            RGFSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYAS +RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRT++DIKLAN+VDLG+LRDPQQDAERVKNPEWLVVVGVCTH
Sbjct:   51 RGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTH 210          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.897e-75
Identity = 137/159 (86.16%), Postives = 151/159 (94.97%), Query Frame = 1
Query:  229 GFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            GFSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LAN+VDLGSLRDPQQDAERVK+PEWLVV+GVCTH
Sbjct:   23 GFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTH 181          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.217e-73
Identity = 134/166 (80.72%), Postives = 154/166 (92.77%), Query Frame = 1
Query:  211 FQLPCRGFSS-ESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            F +  RGFSS E++ PRN+++ +  +PATVAAVKNP  K+VYDEYNHERYPPGDPSKRAFAYFVL+GGRF+YASL+RLL+LKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DIKLAN+VD+ SLR P+QDAERVKNPEWLVV+GVCTH
Sbjct:   53 FFVASRGFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTH 218          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  385 FAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            F+YF++     + A+  +  I +F+ +MSAS DVLAMA +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVCTH
Sbjct:   70 FSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTH 176          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 53/109 (48.62%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  379 RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            R++AYF++     + ++  +  +  F+ SM+A+ DVLAMA +EV+L++I  G  V VKW+GKPVFIR RT  +I+ AN+VD+ +L+DPQ DA+RVK+P+WL+++G+CTH
Sbjct:   53 RSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTH 161          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  364 GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            GD S R  +Y ++     + A+  +  +  F+ S SAS DVLAM+  EVDLS I  G  + VKW+GKPVFIR RT E+I+ AN+VD+ +LRDPQ D++RV+ PEWLV++GVCTH
Sbjct:   62 GDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTH 174          
The following BLAST results are available for this feature:
BLAST of FC930758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI1_TOBAC1.815e-7779.78Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI3_TOBAC6.896e-7784.02Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC1.536e-7683.43Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI2_TOBAC4.470e-7678.69Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI_SOLTU2.218e-7586.25Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI4_TOBAC2.897e-7586.16Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_MAIZE1.217e-7380.72Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR1.458e-2654.21Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST4.242e-2648.62Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO2.750e-2551.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC34108G02EF PostHarvP1 Citrus clementina cDNA clone C34108G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930758 ID=FC930758; Name=FC930758; organism=Citrus clementina; type=EST; length=705bp
GACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAAGATGTT
GAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGTCATTGA
GGCCCATCGCTTCGTCTCGCAATATAATTAACGGCGCCGATTCATCGTCC
TCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGGATATCT
TGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGTCACTGA
CACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACAGTGGCA
GCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAATCATGA
ACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCC
TGACTGGTGGTAGGTTTGTGTACGCTTCACTCATCCGTCTACTTATCCTT
AAATTCGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTATGGCCTC
TCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGACTGTTA
AGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAAGATATC
AAGCTGGCCAACACTGTTGATTTGGGATCTCTTCGTGATCCTCAGCAAGA
CGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGGTCTGCA
CACAT
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