FC930761

Overview
NameFC930761
Unique NameFC930761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930761 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.756e-45
Identity = 89/152 (58.55%), Postives = 116/152 (76.32%), Query Frame = 1
Query:  232 MGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKTFL 687
            MGYAMSRFE +     ++ + ++ S+  S   KP+  LDHEIAQLT+L+S P E+ S+++  KR LP+ST+KMLAGRE N SGRGRFS+ADCCH++SR+LPVN P  VDQ TSR Y+SQFS DGSLF+AGFQ   IRIY+V++GWK+Q   +
Sbjct:    1 MGYAMSRFETDVSVIFSSSSDSETSHD-SLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTSRVYLSQFSTDGSLFIAGFQGCHIRIYNVDKGWKVQNDII 151          
BLAST of FC930761 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 83/147 (56.46%), Postives = 108/147 (73.47%), Query Frame = 1
Query:  247 SRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKTFL 687
            +RF  ++   D+ + V  + +S+    +  +  DHEIAQLTK +S P +  S+++PGK  L VST+KML GRE N+SGRGRFS+AD CH+LSRYLP+NGPW VDQ+TS AYVSQFS DG  FVAGFQ   IRIY+V++GWK+QK  L
Sbjct:    5 TRFGKDNSACDSGNAVEGSGSSKGP-NEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGLFFVAGFQGGHIRIYNVDKGWKVQKDIL 150          
The following BLAST results are available for this feature:
BLAST of FC930761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LE14B_LITER1.756e-4558.55LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
LE14B_PRUAR2.625e-4156.46LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionC34108G05EF PostHarvP1 Citrus clementina cDNA clone C34108G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930761 ID=FC930761; Name=FC930761; organism=Citrus clementina; type=EST; length=690bp
GCAGCGGTTCAGTGGCCAAAACAAACAGCAATTAAATTAAAATAAATTAA
ATAAATTTATGAAAGGCAGAAGCAATCATCACCGCGAATAATAATACCAG
TGTGTTTATCTGCTATTATCCGTTGACAAAAAAACGTTGCCGAATCTGAG
GATTCTAAATTTGGCAATAGGATTATGAAGGATGAAGAGGCTCTAAGAAG
CTGTATAGCAAGTGGAGTTGACTTTGACGAAATGGGATATGCCATGAGTA
GATTCGAGATAGAATCTGAATTCTATGATGCTGCCGATACTGTCAATCAA
GCTAGTAATAGTCGTAGCAAATTCAAGAAACCCTTGAGTGCTTTAGACCA
TGAAATTGCCCAGCTCACGAAGCTGAAATCGGAACCCAAGGAGCATTTTA
GCAAAGAAGTACCTGGGAAGCGGCACTTGCCTGTTTCCACTGTGAAAATG
TTGGCTGGTAGGGAAGGCAATTATTCAGGAAGAGGGAGGTTCTCAGCTGC
AGATTGTTGTCATATGCTTAGTAGATATTTGCCTGTTAATGGGCCCTGGC
CTGTGGACCAGACAACTAGCCGAGCATATGTCTCTCAGTTTTCGGCTGAT
GGTTCTTTATTTGTTGCTGGATTTCAGGCTAGTCAAATTAGAATCTATGA
TGTGGAGAGAGGTTGGAAAATACAGAAGACATTCTTGCTA
back to top