FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:385..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.207e-44
Identity = 105/222 (47.30%), Postives = 142/222 (63.96%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAAT-ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS--KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +L++I Y RGSLQ+LDQ  LP ++ Y  +      W AIR M VRG             VE+       G AA  A F+ DKL +LV++RPTAVN++ AA  L ++ ++ A    +   +V +  I   E ML+ D+  N++IG  GA  L  ++  S  K +VLTHCNTG+LATAGYGTALGVIR+LHS G LE A+C+ETRP+NQG+RLTAFELV+++IP
Sbjct:    2 TLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVA-FVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLERVAPSGGKVTVLTHCNTGALATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIP 222          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_BOVIN (Methylthioribose-1-phosphate isomerase OS=Bos taurus GN=MRI1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.675e-42
Identity = 103/222 (46.40%), Postives = 140/222 (63.06%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAAT-ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +L++I Y RGSLQ+LDQ  LP ++ Y  +      W AIR M VRG             VE+       G AA  A F+ D L +LV++RPTAVN++ AA  L ++ ++ A    +   +V +  I  AE ML  D+  N++IG  GA  L  +   +  K +VLTHCNTG+LATAGYGTALGVIR+LH+ G LE A+C+ETRP+NQG+RLTAFELV+++IP
Sbjct:    2 TLEAIRYSRGSLQILDQLLLPQQSRYEAVGSVRQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVA-FVQDALSFLVTARPTAVNMARAARDLADLAAQEAEREGATEEAVRERVICWAEDMLDKDLRDNRSIGDLGAHHLLKRAAPQGGKVTVLTHCNTGALATAGYGTALGVIRSLHNLGRLEHAFCTETRPYNQGARLTAFELVYEQIP 222          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_SCHPO (Methylthioribose-1-phosphate isomerase OS=Schizosaccharomyces pombe GN=mri1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.313e-42
Identity = 100/220 (45.45%), Postives = 131/220 (59.55%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS-KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            SLQ+I Y    L +LDQ  LP E  Y+ + +  D ++ I++M VRG             V + +L+      ADA  ++ +  E+L  SRPTAVNL + A  ++ I         E  +     I+ AE ML  D+  N  IG+ G  FL    K+  K +VLTHCNTGSLAT+GYGTALG+IR+LH  G LE AYC+ETRP+NQGSRLTAFELVHD+IP
Sbjct:    2 SLQAIIYNEDKLLVLDQLLLPYERKYISVSNVEDAFAVIKKMQVRGAPAIAIVAALSVAVGLKHLSE----DADAKEYVINSFEHLKQSRPTAVNLFETAKFMQGI------ALQEGKNCRNKIIQEAERMLVKDLEDNHNIGTAGRKFLLQHYKDKDKLTVLTHCNTGSLATSGYGTALGIIRSLHESGNLEHAYCTETRPYNQGSRLTAFELVHDKIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XENTR (Methylthioribose-1-phosphate isomerase OS=Xenopus tropicalis GN=mri1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.159e-41
Identity = 101/224 (45.09%), Postives = 136/224 (60.71%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLG---DKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATA-SEANSVFQAYIEAAEIMLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            SL+S+ Y RGSLQ+L+Q  LP ++ Y  +     G  AIR M VRG             VE+      S T  D  SF+    + L +LV +RPTAVN+  AA +L   ++K A  A +    + ++ I+ AE +LK DV  N+ IG +GA   L+      K  +LTHCNTGSLATAGYGTALGV+R+LH  G L   +C+ETRP+NQGSRLTA+ELV+++IP
Sbjct:    2 SLESVRYSRGSLQVLNQLLLPHKSEYEPVTGVQQGADAIRTMKVRGAPAIAIVGVLSLAVELT-----SRTCQDVPSFIAFVQESLCHLVDARPTAVNMKKAADELNAFLAKEAEKAGATTQGLAESVIQWAEALLKKDVEDNQMIGDFGAKHILETAGPTEKVCMLTHCNTGSLATAGYGTALGVVRSLHVLGRLSHVFCTETRPYNQGSRLTAYELVYEKIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.568e-40
Identity = 101/222 (45.50%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAAT-ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +L++I Y  GSLQ+LDQ +LP    Y  +        AIR M VRG             VE+       G AA  A F+ D+L  LV++RPTAVN++ AA  L ++ ++ A    +   +V +  I  AE ML+ D+  N++IG  GA  L  Q   +  K +VLTHCNTG+LATAGYGTALGVIR+LH  G LE  +C+ETRP+NQG+RLTAFELV+++IP
Sbjct:    2 TLEAIRYSPGSLQILDQLQLPEHCHYEALSSVQQASEAIRAMKVRGAPAIALVGCLSLAVELRAGAGGPGLAALVA-FVRDQLRLLVAARPTAVNMARAARDLGQVAAQEAEREGATEETVRERVIRFAEDMLEKDLKDNRSIGDLGARHLLEQTNPRGGKVTVLTHCNTGALATAGYGTALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFELVYEQIP 222          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.674e-40
Identity = 101/221 (45.70%), Postives = 134/221 (60.63%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAAT-ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L++I Y  GSLQ+LDQ +LP    Y  +        AIR M VRG             VE+       G AA  A F+ D+L  LV++RPTAVN++ AA  L  + ++ A    +   +V +  I  AE ML+ D+  N++IG  GA  L  Q   +  K +VLTHCNTG+LATAGYGTALGVIR+LH  G LE  +C+ETRP+NQG+RLTAFELV+++IP
Sbjct:    3 LEAIRYSPGSLQILDQLQLPEHCHYETLSSVQQAREAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAALVA-FVRDQLSLLVAARPTAVNMARAARDLTHMAAREAELEGATEETVRERVIRFAEDMLEKDLKDNRSIGDLGARHLLEQTNPRGGKVTVLTHCNTGALATAGYGTALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFELVYEKIP 222          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XENLA (Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.493e-40
Identity = 95/221 (42.99%), Postives = 135/221 (61.09%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAA-ATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            SL+S+ Y RGSLQ+L+Q  LP ++ Y  +     G  AIR M VRG             VE+              +F+ + L +LVS+RPTAVN+  AA +L   +++ A    + +  + ++ ++ AE +LK DV  N+ IG +GA   L+      K  +LTHCNTGSLATAGYGTALGV+R+LH+ G L   +C+ETRP+NQGSRLTA+ELV+++IP
Sbjct:    2 SLESVRYSRGSLQVLNQLLLPHKSEYEPVTGVQQGADAIRTMKVRGAPAIAIVGVLSLAVELTTKPCQD--VPSLITFVRESLHHLVSARPTAVNMKKAADELNAFLAEEADKPGATSQRLTESVVQWAESLLKKDVEDNQMIGDFGAKHILEKAGPTEKVCMLTHCNTGSLATAGYGTALGVVRSLHALGRLSHVFCTETRPYNQGSRLTAYELVYEKIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THISH (Methylthioribose-1-phosphate isomerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=mtnA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.983e-35
Identity = 96/221 (43.44%), Postives = 132/221 (59.73%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA-AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++++++ +   SL+LLDQR+LP ET+YL+I D      AIREMVVRG             +    L A +    DA   L   LE L +SRPTAVNL  A A++K +I +  A          A +EA A  + +DD+A N+ +G  GA+     L +   +VLTHCNTGSLAT GYGTALGVIR+ + +  +++ Y  ETRP+ QG+RLTA+ELV D IP
Sbjct:    9 DTVRAVLWDGTSLKLLDQRRLPRETVYLDIPDVGAAADAIREMVVRGAPAIGITAAYGVVLAARRLPADTPDWLDA---LTPDLERLAASRPTAVNLFWALARMKSVIGQVGAD-------LPARLEAEARRIHEDDLADNRRMGELGAA-----LMDPAEAVLTHCNTGSLATGGYGTALGVIRSAYGQQRIKKVYADETRPWLQGARLTAWELVQDGIP 214          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ALCBS (Methylthioribose-1-phosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mtnA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.892e-32
Identity = 88/210 (41.90%), Postives = 120/210 (57.14%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVE--VFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            LQLLDQR LP ET++L+I DS     AIR MVVRG             +E  +   +A   T  +A + L D       SRPTAVNL  A  +L+       A   +  ++ QA  E AE + ++D+A N+A+G +GA  L      S  +V THCNTG+LAT G+GTALG+IR+  +   L   +  ETRP+ QGSRLT++EL++D IP
Sbjct:   15 LQLLDQRCLPTETLWLDICDSQQAADAIRNMVVRGAPAIGITAAYGLALEAQIMGNDASWVTLQNAVATLAD-------SRPTAVNLFWALERLQRY-----AGDLQGKALAQALAEDAEAIHREDLAANQAMGEFGADLLP-----SGATVYTHCNTGALATGGHGTALGIIRSAWARNQLTGVFAGETRPWLQGSRLTSWELLNDGIP 207          

HSP 2 Score: 23.8682 bits (50), Expect = 7.892e-32
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  681 CCGCIDEDGRVSAVIVGA 734
            C G + + G++ AVIVGA
Sbjct:  215 CAGQLMQQGKIQAVIVGA 232          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_YEAST (Methylthioribose-1-phosphate isomerase OS=Saccharomyces cerevisiae GN=MRI1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.963e-31
Identity = 94/255 (36.86%), Postives = 137/255 (53.73%), Query Frame = 1
Query:    4 SLQSICYRRG-----SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEV--FNLNAFSGTAA--------DAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS----KFSVLTHCNTGSLATAGYGTALGVIRALHSEGV---------LERAYCS--------ETRPFNQGSRLTAFELVHDRIP 660
            SL++I + R      S+++LDQ  LP  T Y+ I    DG+S I+ M VRG              EV     N  S  A            + L  +L++L+SSRPTAVNLS++  ++K I+  ++   +   S++    E    ++ +D+A N  +G  GA +L + L+      +F+VLT CNTGSLAT+GYGTALGVIR+L  + +         L+   C         ETRP+NQGSRLTA+ELV+D+IP
Sbjct:    2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSSSDLKAFDGSLYNYVCE----LIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKADSGLDNEKCPRMGHVFPLETRPYNQGSRLTAYELVYDKIP 252          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_HUMAN5.207e-4447.30Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]
MTNA_BOVIN1.675e-4246.40Methylthioribose-1-phosphate isomerase OS=Bos taur... [more]
MTNA_SCHPO8.313e-4245.45Methylthioribose-1-phosphate isomerase OS=Schizosa... [more]
MTNA_XENTR3.159e-4145.09Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_MOUSE1.568e-4045.50Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_RAT2.674e-4045.70Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_XENLA3.493e-4042.99Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_THISH1.983e-3543.44Methylthioribose-1-phosphate isomerase OS=Thioalka... [more]
MTNA_ALCBS7.892e-3241.90Methylthioribose-1-phosphate isomerase OS=Alcanivo... [more]
MTNA_YEAST2.963e-3136.86Methylthioribose-1-phosphate isomerase OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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