FC930763

Overview
NameFC930763
Unique NameFC930763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930763_ssr26 microsatellite FC930763_ssr26:26..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC930763 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 34/74 (45.95%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  349 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKE 570
            PK+PP+AFF F+ DFR+ +++ +P+ KS+ A+GKACGE+WK+++ EEK  Y D A +K+ E++  +  Y K+ E
Sbjct:   45 PKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE 118          
BLAST of FC930763 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  349 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENG 576
            PK+PP+AFF F+E+FRK F +++P+ K++ A+GKA G KWKTM+  EK  Y   + +++ E+++ M  Y K++  G
Sbjct:   44 PKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of FC930763 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  349 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENG 576
            PK+PP+AFF F+EDFRK ++E++P+ KS+  +GKA G+KWK +T  EK  +   A +++ E+++ +  Y K++  G
Sbjct:   36 PKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of FC930763 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  349 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 561
            PK+ P+AFF F+E+FRK F+E+NP  KS+ A+GKA G++WK+++  +K  Y   A + + E+++A+A Y K
Sbjct:   41 PKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111          
BLAST of FC930763 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  349 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 561
            PK+ P+AFF F+ +FR+ F+++NP  KS+ A+GKA GE+WK+++  EK  Y   A + + E+++A+A Y K
Sbjct:   42 PKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112          
The following BLAST results are available for this feature:
BLAST of FC930763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_VICFA2.955e-1545.95HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_SOYBN2.501e-1443.42HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI9.505e-1442.11HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE2.766e-1345.07DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.793e-1243.66HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34108G07EF PostHarvP1 Citrus clementina cDNA clone C34108G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930763 ID=FC930763; Name=FC930763; organism=Citrus clementina; type=EST; length=661bp
GAACGCAGAGCTCTCAGAGTGAAGAAGAGAGAGAGGAGAAATGGCGAAGA
AAGCAGCAAACGAATCGAAGGAATCGCAGTCTTCATCAGCTTCCAATCTG
AGCTATTAGACACAGTTGGCCTAAGGGTTCTGTAGTTTTCACTTTAATAA
AACGAAATTTTAACAAAACGATGGTGACGGAATTGGGTGTTACTTTGCAA
TTGGGCTAGGAAAATGGTGTTGAGAAAGAGGCCGACACGACACAGTGTAG
TTGCTGCTGTTGGTATTGAGAAAGAGGGGAAATCCATTTCAGCAAAGAGA
GTGACAACGAAGCTGAAGAAGAAACACGAGAAGCTTGATTCTAAGATGCC
CAAGAAACCCCCCACTGCTTTCTTCTACTTCCTGGAGGATTTTCGTAAGG
GATTCCAAGAGCAGAATCCGGACATCAAGTCAATGCGTGCTATTGGCAAG
GCTTGTGGAGAGAAATGGAAAACTATGACATATGAGGAAAAAGTTAAATA
TTATGATATAGCCACTGAGAAACGAGCTGAGTTTGACAGAGCCATGGCTG
ACTACATCAAGAGAAAGGAAAATGGCAAAGTTGAGAACAGTGAAGAAGAC
TCTGAGTTTGATGAGTATGAGTAGGGTTGCTATTGTATTATTAGTACAAT
GTTTCACGAGG
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