FC930774

Overview
NameFC930774
Unique NameFC930774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15213 contig Ccv1_Contig15213:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930774 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 95/275 (34.55%), Postives = 134/275 (48.73%), Query Frame = 2 
Query:    2 NFYHGESSNHVEHSR-------------------------DLSPDNQKPMIGVGATQHNSELMDAR---PVKDEYI----DSSNGVNAGGV---------NYFLNEPYLDATDNPQFSDGLYLEANDLSSTAEADSQGFDMVEEYLNFFDANDDNSEYLTFDASEILGSGDNNSAQAPLTTEVTEVTDQMSMAGQHQA-EVHGNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFASEFPTKDAALRLNSLAHPSSSVHVTAXMIR 700
            N+ HGESSN+VE                            +   +++KP+I  G+ Q  S   + +    V+DE +     S+N V              NY  +EP++D  +N   +DGLYLE NDLS  A+ D   F   E+YL+FFD      E LTFD S ++G  D    Q  L  +      +  +AG  +A E   +   S+S+Q  D    +S  KYPFLK+ S MLG +    +FAS+F TKD A+RL++ A  S SVHVTA M+R
Sbjct:  228 NYCHGESSNNVESGNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQDENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSC-AQQDDFNF---EDYLSFFD-----DEGLTFDDSLLMGPEDFLPNQEALDQKPAPKELEKEVAGGKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKD-AMRLHA-AQSSGSVHVTAGMMR 491
The following BLAST results are available for this feature:
BLAST of FC930774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH5.101e-2434.55NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC34108H07EF PostHarvP1 Citrus clementina cDNA clone C34108H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930774 ID=FC930774; Name=FC930774; organism=Citrus clementina; type=EST; length=702bp
GAACTTCTATCATGGAGAGTCAAGCAACCATGTTGAGCATTCAAGGGACT
TGAGTCCAGATAATCAGAAGCCCATGATAGGTGTGGGTGCCACACAGCAT
AATTCAGAGCTGATGGATGCAAGACCGGTAAAAGATGAATATATTGATTC
TAGCAATGGTGTCAATGCTGGTGGCGTTAATTATTTTCTCAATGAGCCTT
ACTTGGATGCTACTGATAATCCTCAATTCAGTGATGGATTATACCTAGAA
GCTAACGACCTATCAAGCACTGCTGAAGCTGATTCTCAAGGGTTTGACAT
GGTTGAAGAGTACCTTAATTTCTTTGATGCTAATGATGACAACTCAGAGT
ACCTGACTTTTGATGCTTCTGAAATTCTGGGGAGCGGAGACAACAATTCT
GCCCAAGCACCTCTCACAACAGAGGTGACTGAAGTAACTGATCAAATGTC
CATGGCTGGCCAGCATCAAGCTGAAGTACATGGTAATGATGTTGCATCCA
CTTCAGAGCAAAAGCCAGATATTGTCAAATCCGAATCAGATGTCAAGTAT
CCCTTCCTCAAACAGGCCAGTCAAATGTTGGGCAACGTTGCTGCTGCTCC
TGCATTTGCCTCGGAATTCCCTACAAAGGATGCAGCTCTTCGACTCAATT
CATTGGCTCATCCGTCCAGTTCAGTTCATGTTACTGCCNGTATGATCAGA
AT
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