FC930775

Overview
NameFC930775
Unique NameFC930775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length151
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:29..179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.313e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.632e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
The following BLAST results are available for this feature:
BLAST of FC930775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SEP3_ARATH4.313e-14100.00Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
SEP2_ARATH4.313e-14100.00Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH4.313e-14100.00Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS8_ORYSJ4.313e-14100.00MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS7_ORYSJ4.313e-14100.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.313e-14100.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
CMB1_DIACA4.313e-14100.00MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL9_SINAL4.313e-14100.00Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_PETHY4.313e-14100.00Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA5.632e-1497.37MADS-box transcription factor 1 OS=Pisum sativum G... [more]

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Properties
Property NameValue
Genbank descriptionC34108H08EF PostHarvP1 Citrus clementina cDNA clone C34108H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930775 ID=FC930775; Name=FC930775; organism=Citrus clementina; type=EST; length=151bp
GGAAGAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAG
GATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATG
GCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTT
G
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