FC931770

Overview
NameFC931770
Unique NameFC931770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14357 contig Ccv1_Contig14357:6..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.717e-51
Identity = 100/197 (50.76%), Postives = 138/197 (70.05%), Query Frame = 2
Query:  119 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVLPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSA 709
            M KGPGL+ +IGKKA+DLL KD+N+DQK SI+T+S AGVA+TST  KKG L  GDVA Q + KN+  D+KV T+S  L T T+ E  P  ++I S KVPD NSGK+E+QY H++A  ++++ L Q+P ++ +  IG+  +A G +  +DT SGNFTK  AG+S TK D  AS+ + DKGD + ASY H ++ L  +A
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTA 197          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.825e-51
Identity = 97/197 (49.24%), Postives = 134/197 (68.02%), Query Frame = 2
Query:  119 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVLPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSA 709
            M KGPGL+ DIGKKA+DLL KDY++D+K +ISTYS  GVA+TS+  KKG L  GDV  Q K KN+  D+KVDT SN+ TT T+ E  P  KAI S KVP+  SGK+E+QY H++A  +S++ L  +P ++ ++ IGT ++AFGA+  +DT  G  TK  A ++  K D   S+ L +KGD + ASY H ++ L  +A
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTA 197          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 98/197 (49.75%), Postives = 128/197 (64.97%), Query Frame = 2
Query:  119 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVLPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSA 709
            M KGPGL+ +IGKKA+DLL KDY +D K SI+TYS  GV +TS+  KKG L   DV  Q K KNV  D+KVDT SN+ TT T+ E  P  K I S +VPD  SGKLEVQY HD+A   +++ L  +P ++ +  +GT  IA G +  +DT +G+FTK  AG+S T  D  AS+ L +KGD + ASY H +  L  +A
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTA 197          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.580e-49
Identity = 94/197 (47.72%), Postives = 131/197 (66.50%), Query Frame = 2
Query:  119 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVLPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSA 709
            M KGPGL++DIGKKA+DLL +DY +D K +++TYS  GVA+T++ +KKG L   DV+ Q K KN+  DVKVDT SN+ TT T+ E  P  K I S  VPD  SGK+E+QY H++A   ++I L  SP ++ +   G  ++A G +  +DT +GNFTK  AG+S +  D  AS+ L DKGDT+ ASY H +  +  +A
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTA 197          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.676e-49
Identity = 91/186 (48.92%), Postives = 123/186 (66.13%), Query Frame = 2
Query:  119 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVLPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASY 676
            M KGPGL+ +IGKKA+DLL +DY  DQK S++TYS  GVA+T+T   KG L  GDVA Q K  N   DVKV T+S++LTT T  E  P  K I   K+PD+ SGK EVQYFHD+A  ++++    +P ++ +  +GT  ++ G +  Y+T SGNF  + AG + TK D  AS+IL DKG+ + ASY
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASY 186          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 86/185 (46.49%), Postives = 129/185 (69.73%), Query Frame = 2
Query:  128 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVLPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVH 682
            GPGL+ +IGKKA+DLL +DY  D K +++TY+  GVA+T+T+ KK  L  G++ +Q K KN+  DVK +++SN++TT T+ E+ P  K+I S  VPD  SGK E+QY HD+A  +++I L  SP +++++  GT ++A GA+   DT +GN TKY AG+S +  D  AS+ L +KGD++ ASY H
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYH 187          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.721e-43
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 2
Query:  128 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEVL-PSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVH 682
            GPGL++ IGKKAKDLL +DY  D K +++TY+  G A+T+T+ KK  L+ G++ +Q K KN+  DVK ++ SN++TT T  ++  P  K I S  VPD  SGK+E+QY HD+A   ++I L  +P ++++   GT ++A GA+   DT + NF KY A +S T  D  AS+ L +KGD++ ASY H
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYH 188          
BLAST of FC931770 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 80/188 (42.55%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  134 GLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEV-LPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDN 694
            GL+ DIGKK +DLL KDYN  QK  ++T S  GVA+T+   +K     G++  Q K K +  DVK ++ES++LTT T+ E   P  K+I +L VPD  SGKLE QY H++A   +++ LN +P ++++   G+ +++ G +  +DT + +FTKY A +S+T PD  AS+ L + GDT+ ASY H + N
Sbjct:    6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKN 193          
The following BLAST results are available for this feature:
BLAST of FC931770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_ARATH1.717e-5150.76Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_PEA3.825e-5149.24Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_SOLTU2.480e-5049.75Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU3.580e-4947.72Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC2_ARATH4.676e-4948.92Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ9.750e-4746.49Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT1.721e-4344.62Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE8.839e-4042.55Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionC34201A06EF PostHarveN Citrus clementina cDNA clone C34201A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931770 ID=FC931770; Name=FC931770; organism=Citrus clementina; type=EST; length=714bp
GAAATTTGAAACAAAAAGATCTAAACCCTGGCAGCATTTCCCTTACTATT
GAACCACTCCTCTGGCTCTCCCAAACTTCGCACAGATCCTTCACTTTCGT
CTCTCTCACTAGTCAACCATGAGTAAGGGACCGGGGCTCTTCGCCGACAT
CGGTAAAAAAGCCAAAGATCTTTTGACGAAGGACTACAACGCCGATCAGA
AAATCAGTATCTCCACTTACAGCGGTGCCGGAGTGGCTCTCACATCAACT
GCTGTGAAAAAGGGAGGACTCTCTGCTGGTGATGTTGCTGCACAGTACAA
GTATAAGAATGTTTTATTCGATGTCAAAGTGGACACAGAGTCTAATATTT
TGACAACCTTCACTCTTACTGAGGTCCTTCCATCAACAAAGGCTATTGCT
TCCTTGAAAGTGCCTGATTATAACTCTGGCAAGTTGGAGGTTCAGTACTT
CCATGATCATGCCACCTTTACTTCAGCCATTGCTTTGAATCAATCCCCTT
GCATTGATGTTACAGCCACCATTGGTACCCCGAGCATTGCTTTTGGTGCT
GAGGCTGGGTATGATACCACATCCGGTAATTTTACAAAGTACACAGCCGG
CATTAGTGTGACCAAACCAGATTCATGTGCTTCAATAATTCTGGGTGACA
AGGGAGACACAATTAGAGCATCATACGTACATCATCTGGACAACTTGAAG
AAGAGTGCTGCTGT
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