GH733265

Overview
NameGH733265
Unique NameGH733265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length283
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10229 contig Ccv1_Contig10229:412..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.309e-17
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = -3
Query:   75 DAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 239
            DA  ALE NPDSAKGYK RGMARA LG+W EAA DLH+AS +DYDEEI   LKKV
Sbjct:  179 DANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKV 233          

HSP 2 Score: 21.9422 bits (45), Expect = 4.309e-17
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = -2
Query:  241 VXSKLNKPNAAIR 279
            V  KL KPNAAIR
Sbjct:  166 VYIKLKKPNAAIR 178          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.086e-11
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V
Sbjct:  174 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEV 224          

HSP 2 Score: 23.8682 bits (50), Expect = 2.086e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAIR C
Sbjct:  157 VFVKLQKPNAAIRDC 171          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 2.086e-11
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V
Sbjct:  174 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEV 224          

HSP 2 Score: 23.8682 bits (50), Expect = 2.086e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAIR C
Sbjct:  157 VFVKLQKPNAAIRDC 171          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.563e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    L++V
Sbjct:  173 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREV 223          

HSP 2 Score: 23.8682 bits (50), Expect = 4.563e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAIR C
Sbjct:  156 VFVKLQKPNAAIRDC 170          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.923e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A+E NPDSA+ YK RG A   LG WEEAA DL +A KLDYDE+    L++V
Sbjct:  173 AIEINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREV 223          

HSP 2 Score: 23.8682 bits (50), Expect = 5.923e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAIR C
Sbjct:  156 VFVKLQKPNAAIRDC 170          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.926e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A++ NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V
Sbjct:  172 AIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEV 222          

HSP 2 Score: 23.8682 bits (50), Expect = 5.926e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAIR C
Sbjct:  155 VFVKLQKPNAAIRDC 169          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A4_HUMAN (Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.986e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A+E NPDSA+ YK RG A   LG WEEAA+DL +A K DYDE+    LK+V
Sbjct:  170 AIEINPDSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEV 220          

HSP 2 Score: 23.8682 bits (50), Expect = 5.986e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAIR C
Sbjct:  153 VFVKLQKPNAAIRDC 167          
BLAST of GH733265 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 9.977e-11
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = -3
Query:   75 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 227
            A+E NPDSA+ YK RG A   LG WEEAA+DL  A KLDYDE+    LK+V
Sbjct:  174 AIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEV 224          

HSP 2 Score: 22.3274 bits (46), Expect = 9.977e-11
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  235 VXSKLNKPNAAIR*C 279
            V  KL KPNAAI+ C
Sbjct:  157 VFVKLQKPNAAIQDC 171          
The following BLAST results are available for this feature:
BLAST of GH733265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
F10AL_ARATH4.309e-1774.55FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_PONAB2.086e-1160.78Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_HUMAN2.086e-1160.78Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A1_MOUSE4.563e-1158.82Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A1_RAT5.923e-1158.82Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
F10A1_CHICK5.926e-1158.82Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A4_HUMAN5.986e-1158.82Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV... [more]
F10A5_HUMAN9.977e-1160.78Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionU_53 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733265 ID=GH733265; Name=GH733265; organism=Citrus clementina; type=EST; length=283bp
TAGGTTCACCTGGCAAGATATGCACTATTTAGAAACCGTCTGTANAGCAG
TACCATCTACGAGCATTAGGTTCASACCTTCTTGAGTGCCATGCCAATCT
CCTCATCGTAGTCTAATTTTGATGCCACATGCAAATCATTTGCAGCTTCT
TCCCACTGGCCCAACCTGGCCCTTGCCATCCCACGTATTTTATATCCTTT
TGCTGAGTCAGGGTTAGTCTCTAAAGCTACATAAGCATCAGCGAATTGCA
GCATTAGGTTTGTTTAGTTTACTCRGGACTCAT
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