GH733272

Overview
NameGH733272
Unique NameGH733272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length282
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA11_ARATH (Putative phospholipid-transporting ATPase 11 OS=Arabidopsis thaliana GN=ALA11 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.320e-27
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   45 GTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            G  VER Y LLNVLEF+S+RKRMSVIVR  +G LLLLSKGAD+VMFERLA+NGR+FEE+T+EH+NEYADAGLRTL+
Sbjct:  576 GKTVERVYRLLNVLEFNSARKRMSVIVRDEDGRLLLLSKGADNVMFERLAKNGRKFEEKTREHVNEYADAGLRTLI 651          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA10_ARATH (Phospholipid-transporting ATPase 10 OS=Arabidopsis thaliana GN=ALA10 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.658e-27
Identity = 58/76 (76.32%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   45 GTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            G KVER Y LLNVLEF+S+RKRMSVIVR  +G LLLLSKGAD+VMFERLA+NGR+FE +T+EH+N+YADAGLRTL+
Sbjct:  577 GEKVERVYRLLNVLEFNSTRKRMSVIVRDDDGKLLLLSKGADNVMFERLAKNGRQFEAKTQEHVNQYADAGLRTLV 652          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA9_ARATH (Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.670e-26
Identity = 55/76 (72.37%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   45 GTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            G +VER Y +LNVLEF+S+RKRMSVIV+  +G LLLL KGAD+VMFERL++NGREFEE+T++H+NEYADAGLRTL+
Sbjct:  584 GKRVERLYKVLNVLEFNSTRKRMSVIVQEEDGKLLLLCKGADNVMFERLSKNGREFEEETRDHVNEYADAGLRTLI 659          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA12_ARATH (Putative phospholipid-transporting ATPase 12 OS=Arabidopsis thaliana GN=ALA12 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.260e-26
Identity = 55/76 (72.37%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   45 GTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            G +VER YS+LNVLEFSSS+KRMSVIV+  +G LLLL KGADSVMFERL+E+GR++E++T++H+NEYADAGLRTL+
Sbjct:  579 GERVERLYSVLNVLEFSSSKKRMSVIVQDQDGKLLLLCKGADSVMFERLSESGRKYEKETRDHVNEYADAGLRTLI 654          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA8_ARATH (Putative phospholipid-transporting ATPase 8 OS=Arabidopsis thaliana GN=ALA8 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.181e-24
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 3
Query:   45 GTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLLRTH 281
            G KV+R Y LL+VLEFSSSRKRMSVIVR+ E  LLLLSKGADSVMF+RLA++GR+ E +TKEHI +YA+AGLRTL+ T+
Sbjct:  572 GEKVDRVYELLHVLEFSSSRKRMSVIVRNPENRLLLLSKGADSVMFKRLAKHGRQNERETKEHIKKYAEAGLRTLVITY 650          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA4_ARATH (Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 3
Query:   36 SSPGTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            S  G  +ER Y +LN+L+F+S RKRMSV+VR  EG +LLL KGADS++FERLA+NG+ +   T +H+NEY +AGLRTL
Sbjct:  584 SHSGQTIEREYKVLNLLDFTSKRKRMSVVVRDEEGQILLLCKGADSIIFERLAKNGKVYLGPTTKHLNEYGEAGLRTL 661          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA6_ARATH (Phospholipid-transporting ATPase 6 OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 3
Query:   36 SSPGTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            SS G  V+R Y +LN+L+F+S RKRMS IVR  EG +LLL KGADS++FERL+++G+E+   T +H+N Y +AGLRTL
Sbjct:  604 SSSGQPVDREYKILNLLDFTSKRKRMSAIVRDEEGQILLLCKGADSIIFERLSKSGKEYLGATSKHLNVYGEAGLRTL 681          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA5_ARATH (Putative phospholipid-transporting ATPase 5 OS=Arabidopsis thaliana GN=ALA5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 3
Query:   36 SSPGTKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            S  G  +ER Y +LN+LEF+S RKRM+VIVR  EG +LLL KGADS++FERLA+NG+ +   T  H+ EY +AGLRTL
Sbjct:  595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFERLAKNGKTYLGPTTRHLTEYGEAGLRTL 672          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA7_ARATH (Putative phospholipid-transporting ATPase 7 OS=Arabidopsis thaliana GN=ALA7 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.412e-19
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 3
Query:   60 RSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            R Y  LNVL+F+S RKRMSVIVR  +G +LLL KGADS++FERL++NG+ + E T +H+N Y +AGLRTL
Sbjct:  614 REYKFLNVLDFTSKRKRMSVIVRDEKGQILLLCKGADSIIFERLSKNGKNYLEATSKHLNGYGEAGLRTL 683          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8A1_MOUSE (Probable phospholipid-transporting ATPase IA OS=Mus musculus GN=Atp8a1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            E  Y LLNVLEF+S+RKRMSV+VR+  G L L  KGAD+V++ERLAE  + ++E T +H+ ++A  GLRTL
Sbjct:  523 EERYELLNVLEFTSARKRMSVVVRTPSGKLRLYCKGADTVIYERLAETSK-YKEITLKHLEQFATEGLRTL 592          
The following BLAST results are available for this feature:
BLAST of GH733272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ALA11_ARATH3.320e-2777.63Putative phospholipid-transporting ATPase 11 OS=Ar... [more]
ALA10_ARATH9.658e-2776.32Phospholipid-transporting ATPase 10 OS=Arabidopsis... [more]
ALA9_ARATH3.670e-2672.37Putative phospholipid-transporting ATPase 9 OS=Ara... [more]
ALA12_ARATH6.260e-2672.37Putative phospholipid-transporting ATPase 12 OS=Ar... [more]
ALA8_ARATH1.181e-2472.15Putative phospholipid-transporting ATPase 8 OS=Ara... [more]
ALA4_ARATH1.351e-2058.97Putative phospholipid-transporting ATPase 4 OS=Ara... [more]
ALA6_ARATH6.704e-2057.69Phospholipid-transporting ATPase 6 OS=Arabidopsis ... [more]
ALA5_ARATH6.704e-2058.97Putative phospholipid-transporting ATPase 5 OS=Ara... [more]
ALA7_ARATH7.412e-1961.43Putative phospholipid-transporting ATPase 7 OS=Ara... [more]
AT8A1_MOUSE8.481e-1556.34Probable phospholipid-transporting ATPase IA OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionU_60 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733272 ID=GH733272; Name=GH733272; organism=Citrus clementina; type=EST; length=282bp
TGAAGACTNAACAGCATCTCAGTGCATGAGTTAGATCCAGTCCTGGCACG
AAAGTTGAAAGGTCGTACAGTCTTTTGAATGTCTTGGAGTTTAGTAGCTC
TAGAAAACGGATGTCTGTGATTGTAAGAAGCNAGGAGGGAACCCTGCTTC
TACTTTCTAAAGGAGCTGACAGTGTAATGTTTGAAAGACTTGCGGAAAAT
GGAAGAGAGTTTGAAGAGCAGACAAAGGAACACATCAATGAGTATGCTGA
TGCTGGTTTGAGGACCTTACTCAGGACTCATC
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