GH733278

Overview
NameGH733278
Unique NameGH733278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length208
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733278 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.522e-15
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -1
Query:   23 KAKRNIMKLPRNGDVXFTHANISLAQRELGYKPTTRSADRAEEVCAGYLSYYAGERR 193
            KAK+N++K+PRNGDV FTHANISLAQRELGYKPTT      ++    YLSYY+G+++
Sbjct:  377 KAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYYSGDKK 433          
BLAST of GH733278 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.478e-14
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = -1
Query:   23 KAKRNIMKLPRNGDVXFTHANISLAQRELGYKPTTRSADRAEEVCAGYLSYYAGERR 193
            KAKRNIMKLPRNGDV FTHANIS AQRELGYKPTT      ++    YL YY G ++
Sbjct:  371 KAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGYYNGGKK 427          
BLAST of GH733278 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.030e-12
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = -1
Query:   38 KAKRNIMKLPRNGDVXFTHANISLAQRELGYKPTTRSADRAEEVCAGYLSYY 193
            KAKRN+MKLPRNGDV FTHANIS AQRE GYKP+T      ++    YL YY
Sbjct:  372 KAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYY 423          
BLAST of GH733278 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.746e-11
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = -1
Query:   23 KAKRNIMKLPRNGDVXFTHANISLAQRELGYKPTTRSADRAEEVCAGYLSYYAGERR 193
            KAK+ IM LPRNGDV FTHANI+LAQ ELGYKP        ++    Y+ +Y G ++
Sbjct:  376 KAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFYTGSKK 432          
The following BLAST results are available for this feature:
BLAST of GH733278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GAE4_ARATH6.522e-1563.16UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH2.478e-1466.67UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE2_ARATH3.030e-1265.38UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE5_ARATH9.746e-1152.63UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionU_66 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733278 ID=GH733278; Name=GH733278; organism=Citrus clementina; type=EST; length=208bp
CAAATCAAGACGANAACCGCAGCCTTCTTTCCCCAGCGTAGTAACTGAGG
TACCCCGCACAAACTTCTTCAGCCCTATCTGCAGATCTAGTTGTCGGCTT
ATACCCCAGTTCTCTCTGAGCCAAACTAATATTCGCATGAGTAAACNGAA
CATCACCATTTCTCGGCAACTTCATAATATTTCTCTTGGCCTTACTACAG
GACTCATC
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