GH733279

Overview
NameGH733279
Unique NameGH733279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length209
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14471 contig Ccv1_Contig14471:885..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GH733279 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.648e-16
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2 
Query:   17 FSPYPKFLELVMPAINEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKXLVVVAPE 184
            +  YPKFLELV+P I EGK+ YVED+A+GLEKAP ALVG+F G+NVGK +VV+A E
Sbjct:  288 YDKYPKFLELVLPRIKEGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVIARE 343
[Close]
BLAST of GH733279 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.522e-15
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:   17 FSPYPKFLELVMPAINEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKXLVVVAPE 184
            +  Y KFLE V+P I EGK+ YVED+A+GLEKAP ALVG+F G+NVGK +VVVA E
Sbjct:  290 YDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345
The following BLAST results are available for this feature:
BLAST of GH733279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
P2_ARATH2.648e-1667.86Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH6.522e-1566.07Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionU_67 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733279 ID=GH733279; Name=GH733279; organism=Citrus clementina; type=EST; length=209bp
GNTTTCTTGCCGGTGATTCTCCCCNTATCCGAAATTCTTGGAACTGGTTA
TGCCGGCAATCAATGAAGGAAAGTTAGTATATGTCGAGGACATAGCTGAA
GGCCTNGAGAAAGCTCCATCAGCCCTAGTTGGGATATTCACTGGTCAAAA
TGTTGGAAAACANCTGGTTGTAGTTGCTCCTGAATGATATGATTACTATN
TGCTTTACT
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