GH733301

Overview
NameGH733301
Unique NameGH733301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:567..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733301 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 2.415e-18
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 2
Query:  140 RSRELPRSKAEAAEYQKLLATRLKEQRERRSESLAKKRS 256
            + + + ++K+EAAEYQKLLA+RLKEQRE+RSESLAKKRS
Sbjct:  149 KKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRS 187          

HSP 2 Score: 51.6026 bits (122), Expect = 2.415e-18
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   37 FTTKSR*ARLARHRKLQRLVTPLTLQRKRARIAEKKQRIAKVQ 165
            FTTK + ++     K+QRLVTPLTLQRKRARIA+KK+RIAK +
Sbjct:  118 FTTKWKGSKAP---KIQRLVTPLTLQRKRARIADKKKRIAKAK 157          
BLAST of GH733301 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 1.510e-17
Identity = 25/39 (64.10%), Postives = 35/39 (89.74%), Query Frame = 2
Query:  140 RSRELPRSKAEAAEYQKLLATRLKEQRERRSESLAKKRS 256
            + + + ++ ++AA+YQKLLA+RLKEQR+RRSESLAKKRS
Sbjct:  199 KKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRS 237          

HSP 2 Score: 53.1434 bits (126), Expect = 1.510e-17
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   34 TFTTKSR*ARLARHRKLQRLVTPLTLQRKRARIAEKKQRIAK 159
            TFT K    ++++  K+QRLVTPLTLQRKRARIA+KK+RIAK
Sbjct:  165 TFTNKKG-KKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAK 205          
BLAST of GH733301 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 1.232e-16
Identity = 25/39 (64.10%), Postives = 36/39 (92.31%), Query Frame = 2
Query:  140 RSRELPRSKAEAAEYQKLLATRLKEQRERRSESLAKKRS 256
            + +++ ++ ++AA+YQKLLA+RLKEQR+RRSESLAKKRS
Sbjct:  199 KKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRS 237          

HSP 2 Score: 49.6766 bits (117), Expect = 1.232e-16
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   43 TKSR*ARLARHRKLQRLVTPLTLQRKRARIAEKKQRIAK 159
            T  +   +++  K+QRLVTPLTLQRKRARIA+KK++IAK
Sbjct:  167 TNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAK 205          
The following BLAST results are available for this feature:
BLAST of GH733301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RS6_TOBAC2.415e-1871.7940S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS62_ARATH1.510e-1764.1040S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH1.232e-1664.1040S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionU_99 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733301 ID=GH733301; Name=GH733301; organism=Citrus clementina; type=EST; length=302bp
GATGAGTCCTGCAGTAACGCCGTNTNCGTAGGTACCTTCACAACAAAATC
TCGGTAAGCAAGGTTAGCAAGGCACCGAAAATTACAGAGGTTGGTAACTC
CTTTGACTCTGCAAAGGAAGCGTGCAAGAATTGCAGAAAAGAAGCAGAGA
ATTGCCAAGGTCCAAGGCTGAAGCAGCGGAATACCAGAAGCTCCTTGCTA
CCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGAGAGTTTGGCAAAGAAG
AGGTCTAGCGCTCTCTGCTGCTTCAAAAGCCCATACTATTGCAGCTTAGA
TT
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