GH733316

Overview
NameGH733316
Unique NameGH733316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length188
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.871e-25
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = -3
Query:    1 LSNGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 180
            L NGTEEYMKL+ + P+VHKN+LGRPWK+YSRTVFI CNLEAL+ PDGWLPWSGDFALKT
Sbjct:  443 LINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKT 502          
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.690e-23
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = -3
Query:    1 NGTEEYMKLYYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 174
            NGTEEYMK + + P  HKN+LGRPWKE+SRTVF++CNLE+L+ PDGW+PW+GDFALKT
Sbjct:  496 NGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKT 553          
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.046e-12
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = -3
Query:    1 KNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 123
            + YLGRPW+ +SRTVF+ CNL ALV P GWLPWSG FAL T
Sbjct:  455 ETYLGRPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFALST 495          
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.901e-12
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = -3
Query:    1 KNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 123
            K YLGRPWKEYSRTVF+   +E+L+ P GWL WSGDFAL T
Sbjct:  221 KTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTT 261          
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.901e-12
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = -3
Query:    1 YYSKPRVHKNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 147
            Y     V+K YLGRPWKE+SRT+ +   ++ ++ P GWLPWSGDFALKT
Sbjct:  462 YIPMKSVNKAYLGRPWKEFSRTIIMKTTIDDVIDPAGWLPWSGDFALKT 510          
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.842e-11
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -3
Query:    1 KNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 123
            K YLGRPW++YSRTVF+  +L++L+ P GWL W G+FALKT
Sbjct:  413 KTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKT 453          
BLAST of GH733316 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.630e-11
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -3
Query:    1 KNYLGRPWKEYSRTVFIHCNLEALVHPDGWLPWSGDFALKT 123
            K +LGRPWK+YSRTV+I   L++L++P GW+ WSGDFAL T
Sbjct:  411 KTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNT 451          
The following BLAST results are available for this feature:
BLAST of GH733316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PME51_ARATH1.871e-2581.67Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME64_ARATH8.690e-2372.41Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME6_ARATH4.046e-1270.73Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_ACTDE6.901e-1270.73Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME23_ARATH6.901e-1257.14Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME17_ARATH5.842e-1163.41Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME2_CITSI7.630e-1163.41Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
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Properties
Property NameValue
Genbank descriptionU_116 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733316 ID=GH733316; Name=GH733316; organism=Citrus clementina; type=EST; length=188bp
CGTTTTCAAAGCAAAATCACCGCTCCAAGGCAGCCACCCGTCTGGATGTA
CAAGAGCTTCTAAGTTACAGTGAATAAAAACAGTTCTCGAGTACTCTTTC
CATGGCCTCCCCAAGTAATTCTTGTGCACACGAGGCTTACTATAATACAA
TTTCATGTACTCCTCGGTGCCGTTACTCAGGACTCATC
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