BG733597

Overview
NameBG733597
Unique NameBG733597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12688 contig Csv1_Contig12688:212..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.933e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            RIRIEGLLAAF KLVGTGKQHTYVETENVRYVYQPIE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDE+G+CKTAFEL+FAF
Sbjct:   26 RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.933e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            RIRIEGLLAAF KLVGTGKQHTYVETENVRYVYQPIE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDE+G+CKTAFEL+FAF
Sbjct:   26 RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.568e-39
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            RIRI+GLLAAF KLVG+GKQHTYVETENVRYVYQPIEALYLLL+TNKQSNILEDL+TLRLLSKL+PEY+ SLDE+G+CK AFELLFAF
Sbjct:   26 RIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.975e-35
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            RIRIEGLLAAF KLVG GKQHTY+ETENVRYVYQPIEAL+LLLVT KQSNILEDL TL LLSKLVPEYS SLDE+GI + +FEL+FAF
Sbjct:   26 RIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_DICDI (Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.495e-30
Identity = 61/86 (70.93%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    7 RIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R+EGLLAAF KL+G G+QHT++ETEN+RYVYQP+E+LY++L+TNK SNILEDLETL LL+KLVPEYS + DE  I K AFEL+F F
Sbjct:   28 RVEGLLAAFPKLIGLGRQHTFIETENIRYVYQPLESLYIVLITNKNSNILEDLETLHLLAKLVPEYS-NFDEYDISKNAFELIFTF 112          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R RIEGLLAAF KL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAF
Sbjct:   26 RTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R RIEGLLAAF KL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAF
Sbjct:   26 RTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R RIEGLLAAF KL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAF
Sbjct:   26 RTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R RIEGLLAAF KL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAF
Sbjct:   26 RTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAF 113          
BLAST of BG733597 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 RIRIEGLLAAFTKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAF 264
            R RIEGLLAAF KL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAF
Sbjct:   26 RTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAF 113          
The following BLAST results are available for this feature:
BLAST of BG733597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPD2_ORYSJ5.933e-4090.91Coatomer subunit delta-2 OS=Oryza sativa subsp. ja... [more]
COPD1_ORYSJ5.933e-4090.91Coatomer subunit delta-1 OS=Oryza sativa subsp. ja... [more]
COPD3_ORYSJ8.568e-3987.50Coatomer subunit delta-3 OS=Oryza sativa subsp. ja... [more]
COPD_ARATH1.975e-3584.09Coatomer subunit delta OS=Arabidopsis thaliana GN=... [more]
COPD_DICDI9.495e-3070.93Coatomer subunit delta OS=Dictyostelium discoideum... [more]
COPD_RAT1.371e-2867.05Coatomer subunit delta OS=Rattus norvegicus GN=Arc... [more]
COPD_PONAB1.371e-2867.05Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE... [more]
COPD_MOUSE1.371e-2867.05Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE... [more]
COPD_HUMAN1.371e-2867.05Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE... [more]
COPD_CHICK1.371e-2867.05Coatomer subunit delta OS=Gallus gallus GN=ARCN1 P... [more]

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Properties
Property NameValue
Genbank descriptionCs-15c Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-15c, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG733597 ID=BG733597; Name=BG733597; organism=Citrus sinensis; type=EST; length=264bp
CGAATCAGGATTGAAGGTCTTCTTGCTGCTTTTACTAAGTTGGTTGGCAC
TGGAAAACAGCATACATATGTTGAGACTGAAAATGTGCGCTATGTTTACC
AGCCAATAGAAGCTTTGTATCTGCTGCTTGTGACAAACAAACAGAGCAAC
ATCCTTGAAGATTTGGAAACTCTGAGGCTTCTCTCCAAGCTTGTACCTGA
ATATTCATACTCTCTAGATGAGGATGGTATCTGCAAGACAGCTTTTGAGC
TGCTTTTTGCATTC
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