BG791314

Overview
NameBG791314
Unique NameBG791314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length224
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL_ARATH (Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.669e-31
Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFRRDLRESVETVKQNPGPANSGLAPIYSAAGRMPD 223
            DIFEVNDIMSSKGWHLN LQRPNSIHIC+TLQHV VVD F RDLRE+VETVK NPGP   GLAPIY AAG+MPD
Sbjct:  455 DIFEVNDIMSSKGWHLNALQRPNSIHICITLQHVPVVDDFLRDLREAVETVKANPGPITGGLAPIYGAAGKMPD 528          
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL_ORYSJ (Sphingosine-1-phosphate lyase OS=Oryza sativa subsp. japonica GN=SPL PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.172e-27
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFRRDLRESVETVKQNPGPANSGLAPIYSAAGRMPD 223
            DIFEVNDIMSSKGWHLN LQRPNS+HICVTLQH  + + F +DL++SV+TVK NPGP + G APIY AAG+MPD
Sbjct:  450 DIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTVIYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPD 523          
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL_DICDI (Sphingosine-1-phosphate lyase OS=Dictyostelium discoideum GN=sglA PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.587e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHVAVVDVFRRDLRESVETVKQNPGP-ANSGLAPIYSAAGRMPD 223
            +IF VND MS KGWHLN LQRPNS+H+CVT + + +  +F  DL++S++ VK N G     G APIY +A  +PD
Sbjct:  428 NIFYVNDYMSKKGWHLNALQRPNSLHVCVTAKMIGMESLFIEDLKDSIKLVKDNSGSLPKDGTAPIYGSAHSVPD 502          
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL1_PONAB (Sphingosine-1-phosphate lyase 1 OS=Pongo abelii GN=SGPL1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.842e-11
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV--AVVDVFRRDLRESVETVKQNPGPANSGLAPIYSAA 208
            DI+ ++++M++KGW+LN LQ P SIH C+TL H    V   F +D+RESV  + +NP    +G+  IY  A
Sbjct:  459 DIYRLSNLMTAKGWNLNQLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMA 529          
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL1_HUMAN (Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN=SGPL1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.842e-11
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV--AVVDVFRRDLRESVETVKQNPGPANSGLAPIYSAA 208
            DI+ ++++M++KGW+LN LQ P SIH C+TL H    V   F +D+RESV  + +NP    +G+  IY  A
Sbjct:  459 DIYRLSNLMTAKGWNLNQLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMA 529          
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL1_RAT (Sphingosine-1-phosphate lyase 1 OS=Rattus norvegicus GN=Sgpl1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.964e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV--AVVDVFRRDLRESVETVKQNPGPANSGLAPIYSAA 208
            DI+ ++++MS+KGW+ N LQ P SIH C+TL H    V   F +D+RESV  + +NP    +G+  IY  A
Sbjct:  459 DIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMA 529          
BLAST of BG791314 vs. ExPASy Swiss-Prot
Match: SGPL1_MOUSE (Sphingosine-1-phosphate lyase 1 OS=Mus musculus GN=Sgpl1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.964e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 2
Query:    2 DIFEVNDIMSSKGWHLNPLQRPNSIHICVTLQHV--AVVDVFRRDLRESVETVKQNPGPANSGLAPIYSAA 208
            DI+ ++++MS+KGW+ N LQ P SIH C+TL H    V   F +D+RESV  + +NP    +G+  IY  A
Sbjct:  459 DIYRLSNMMSAKGWNFNYLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMA 529          
The following BLAST results are available for this feature:
BLAST of BG791314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SGPL_ARATH8.669e-3183.78Sphingosine-1-phosphate lyase OS=Arabidopsis thali... [more]
SGPL_ORYSJ1.172e-2772.97Sphingosine-1-phosphate lyase OS=Oryza sativa subs... [more]
SGPL_DICDI1.587e-1652.00Sphingosine-1-phosphate lyase OS=Dictyostelium dis... [more]
SGPL1_PONAB5.842e-1143.66Sphingosine-1-phosphate lyase 1 OS=Pongo abelii GN... [more]
SGPL1_HUMAN5.842e-1143.66Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN... [more]
SGPL1_RAT9.964e-1143.66Sphingosine-1-phosphate lyase 1 OS=Rattus norvegic... [more]
SGPL1_MOUSE9.964e-1143.66Sphingosine-1-phosphate lyase 1 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionCs-31a Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-31a, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG791314 ID=BG791314; Name=BG791314; organism=Citrus sinensis; type=EST; length=224bp
CGACATATTTGAAGTCAACGATATCATGTCTTCCAAAGGCTGGCATTTGA
ATCCATTGCAAAGACCCAACAGCATTCACATCTGTGTTACCCTTCAACAT
GTAGCTGTTGTTGACGTTTTCCGTAGAGATTTAAGGGAATCTGTTGAAAC
TGTAAAACAAAATCCCGGTCCTGCAAATAGTGGTCTAGCTCCCATATATA
GTGCTGCAGGGAGAATGCCAGATC
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