BQ622968

Overview
NameBQ622968
Unique NameBQ622968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13300 contig Csv1_Contig13300:40..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ622968 vs. ExPASy Swiss-Prot
Match: UGPI7_ARATH (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.928e-39
Identity = 86/188 (45.74%), Postives = 115/188 (61.17%), Query Frame = 1 
Query:   22 LTRSRCCPVLATWLYAAYSTTALGRAATETAKTPATRSVDLPLLPDDSETCVDDLGKAMKQRGIDLPRPNETCDVVYCYCGIRLH---PLTCPEAFSLNPRGK-LVGNVNVKRLERHCLSSSNNVNGFPGLGGCNKCLNSLYQLNKKTFNTSKAEDRTTKMHNKDCQLMGLTWLLEKNRTGYIHTGSA 573
            L RSRCCPVLA WL+AA++ +AL   A   A TP +   D P+ PDDS+ CV+ L  A+  + I +P+PN +CD + C+CGIRLH    L+CP AF+++   K       VK LE+ C +SS          GC +CL +L +L  +  N     +R TKM +KDCQLMGLTWLL +N+T YI T SA
Sbjct:   66 LDRSRCCPVLAAWLFAAHARSALQLPAP--APTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILCFCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSS--------YSGCTRCLGALQKLKVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSA 243
The following BLAST results are available for this feature:
BLAST of BQ622968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI7_ARATH4.928e-3945.74Uncharacterized GPI-anchored protein At4g28100 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00059 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00059 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622968 ID=BQ622968; Name=BQ622968; organism=Citrus sinensis; type=EST; length=574bp
ACCACGCAGGCCTCTTCCCAGCTGACGCGCAGCCGATGCTGCCCTGTCCT
CGCCACGTGGCTCTACGCCGCCTACTCCACCACCGCCCTCGGCAGAGCAG
CTACAGAAACAGCAAAGACCCCCGCCACCAGGTCTGTGGACCTGCCGTTG
CTCCCCGATGACTCTGAGACCTGCGTTGATGATTTGGGGAAAGCCATGAA
ACAGAGAGGCATTGATCTGCCGAGGCCCAACGAGACTTGCGATGTTGTGT
ACTGTTACTGTGGCATTCGACTGCATCCTCTGACTTGCCCGGAAGCTTTT
TCTTTGAATCCGAGAGGAAAGCTTGTTGGGAATGTGAACGTGAAGAGGCT
GGAGAGGCACTGCTTGAGTAGCAGCAACAATGTCAATGGATTCCCAGGTC
TTGGTGGCTGTAACAAGTGCTTGAATTCTCTCTATCAGCTTAACAAGAAG
ACTTTTAATACAAGCAAAGCAGAGGACAGGACCACCAAAATGCACAACAA
AGATTGTCAGTTGATGGGCCTCACATGGCTTCTTGAAAAAAATCGAACGG
GATACATTCACACGGGTTCCGCTG
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