BQ623002

Overview
NameBQ623002
Unique NameBQ623002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:601..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  140 TDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 126
            DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:  141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 123
            TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN I N+
Sbjct:  140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQ 180          
The following BLAST results are available for this feature:
BLAST of BQ623002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ARF2_ORYSJ4.383e-19100.00ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ1.666e-1897.62ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH1.666e-1897.62ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH2.175e-1897.62ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CHLRE2.175e-1897.56ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_CATRO2.841e-1897.62ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_SALBA3.710e-1895.24ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_VIGUN4.846e-1895.24ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA1.410e-1795.12ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SOLTU6.998e-1792.68ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00093 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623002 ID=BQ623002; Name=BQ623002; organism=Citrus sinensis; type=EST; length=360bp
ACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTATATCCA
GAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGACTGGC
TCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTGAGTTTTG
GGTTGCCGCAACTGCTGAAATACAGAGTTAACAACACATCTCAAGTGTTC
TTGCTTTCCTTCCTGTAATAGCTTCGTTGCCCGTTTTACTGTGTTTGTTG
TTTCCCTTGCAAACGTTGAGATTTGTTTCTTGTAGCTTCAGAATAATTCT
TGAATGTTTATCTTTCCTCATGGTGTCCTCTCGATAGCCTCCTTTTTCCT
GATAAAAAAA
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