BQ623063

Overview
NameBQ623063
Unique NameBQ623063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9708 contig Csv1_Contig9708:567..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623063 vs. ExPASy Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.897e-38
Identity = 89/163 (54.60%), Postives = 102/163 (62.58%), Query Frame = 3 
Query:    3 NPNIGEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERXXXXXXXXXXXXXXXXXXXXXXTLMXXXXXXXXXXXXQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEEVLKSGQLPADLKIPD 491
            NPN+GEFLPK               EIDPL S+PKLQ+LSLLDN+ITKK NYRLYVIHKLKSLRVLDF K+K KER                       +              +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L IPD
Sbjct:   80 NPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSLLDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEV----KKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLIIPD 238
The following BLAST results are available for this feature:
BLAST of BQ623063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RU2A_ARATH3.897e-3854.60U2 small nuclear ribonucleoprotein A' OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00154 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00154 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623063 ID=BQ623063; Name=BQ623063; organism=Citrus sinensis; type=EST; length=634bp
TTAATCCCAACATTGGAGAGTTCTTGCCAAAATTACACACTTTGGTTTTG
ACAAACAACAGGCTTGTCAATCTAGTGGAGATTGATCCTCTAACATCCCT
TCCAAAGTTGCAGTTCCTTAGTTTATTGGACAATAGCATCACCAAAAAGC
CCAATTATCGGTTGTATGTGATTCACAAGCTGAAATCTCTCCGTGTTTTG
GATTTCAAGAAGGTGAAAAACAAGGAAAGAATGGAAGCAGCAAGTCTGTT
TGCCTCAGAAGAAATGGAAGAGGAGGCTAAGAAGGAATCTATGAAGACAT
TGATGCCAGTTGAGGTTCCGAATGTTTCAGAAGAAGAGGAACAACAAACT
CCAAAAGTGGTTGCCCCCACTCCTGAGCAGATTATAGCCATCAAGGCTGC
TATTGTGAATTCTCAGACACTTGAAGAGGTTGCAAGACTTGAAGAGGTTC
TGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTCCGGACTATGATTCT
GGCAGCAAGGATGTGAAAGAAAATGATGAGAAAATGGTACCTGACGTTGA
AAATGAGGCTGATGTTGAACCAAACAATGTGGAAAACCAGAAGAATGATG
AACTTGCTGCGATGGAACAGGACTAGAAGGGGTG
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