BQ623070

Overview
NameBQ623070
Unique NameBQ623070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623070_ssr431 microsatellite BQ623070_ssr431:431..440. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:203..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.500e-63
Identity = 123/205 (60.00%), Postives = 152/205 (74.15%), Query Frame = 3
Query:    3 QLSKGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLREPIHF 617
            +L + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                              DP+ILGGLVVEFGQK FDMSI++RARQMERFLREP++F
Sbjct:   40 ELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.438e-50
Identity = 103/203 (50.74%), Postives = 137/203 (67.49%), Query Frame = 3
Query:   18 FSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLREPIHFGTL 626
            ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                              DPSI GGL+VEF QK  DMSI++RA+QMER LREP+ F  L
Sbjct:   36 YATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.878e-24
Identity = 69/197 (35.03%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   18 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 68/197 (34.52%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   18 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 64/197 (32.49%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   18 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                                DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   18 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 65/199 (32.66%), Postives = 100/199 (50.25%), Query Frame = 3
Query:   12 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 63/199 (31.66%), Postives = 100/199 (50.25%), Query Frame = 3
Query:   12 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 63/197 (31.98%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   18 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLRE 605
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.488e-21
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 3
Query:   18 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKGFDMSIKSRARQMERFLREPI 611
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of BQ623070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPO_IPOBA3.500e-6360.00ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH4.438e-5050.74ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB1.878e-2435.03ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN7.135e-2434.52ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE3.541e-2332.49ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_BOVIN1.757e-2232.99ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_MOUSE8.722e-2232.66ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT1.139e-2131.66ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_PIG1.139e-2131.98ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]
ATPO_CALMO1.488e-2131.66ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00161 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00161 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623070 ID=BQ623070; Name=BQ623070; organism=Citrus sinensis; type=EST; length=632bp
CACAGTTATCGAAAGGTTTTTCCACTTCGTCGGTGCAGAAGGAGCAGAAA
GTTAAGGTGCCTCTGGCTTTGTTTGGAGGTTCAGGAAATTATGCCTCTGC
TCTGTACATTGCCGCAGTGAAAACTAACGCACTGGAGAAGGTTGAGTCTG
AGATTCTTGACCTTGTCGAGGCTTCAAAGAAGGCTGATACATATTTTCAG
TTCACAAAGGACTTGTCTGTGCCTGCAGAGACAAGAGTTAAGGCCATTAA
CGAAATCTGTACTCAGGCTAAATTTTCAGATGTTACGAAGCACTTCTTAG
TTGTTTTGGCTGAGAATGGGAGGCTTAGAAACTTAGACACCATCGCTAAG
AGGTTTGTGGAGTTAACCATGGCACACAAGGGCGAAGTAAAAGTTACTGT
TACATCCGTTATTCCACTTCCCCCAGAAGAAGAGAGAGAGTTGAAAGAGA
CACTGCAAGAGACACTTGGCCAAGGGAAGAAAGTCAAGGTTGAACAGAAG
GTTGATCCTAGCATTCTTGGTGGGCTCGTAGTAGAGTTTGGGCAAAAGGG
GTTTGACATGTCCATTAAGTCTAGGGCGCGGCAGATGGAAAGGTTCCTAC
GTGAGCCCATTCATTTTGGCACCCTCTAAAAA
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