BQ623138 | Citrus Genome Database

Overview


Name	BQ623138
Unique Name	BQ623138
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	598

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13374	contig	Csv1_Contig13374:806..1399.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.093e-65
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 2

Query:  113 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDAT
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDAT 119

HSP 2 Score: 44.669 bits (104), Expect = 1.093e-65
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAIYLLTTGARE+AF
Sbjct:  135 SPLRRVNQAIYLLTTGAREAAF 156

HSP 3 Score: 34.2686 bits (77), Expect = 1.093e-65
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIGSAGVVRRQAVDI P+
Sbjct:  120 RIGSAGVVRRQAVDISPL 137

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 7.455e-64
Identity = 101/129 (78.29%), Postives = 113/129 (87.60%), Query Frame = 2

Query:   83 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDAT
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDAT 129

HSP 2 Score: 43.1282 bits (100), Expect = 7.455e-64
Identity = 20/22 (90.91%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI+LLTTGARE+AF
Sbjct:  145 SPLRRVNQAIFLLTTGAREAAF 166

HSP 3 Score: 34.2686 bits (77), Expect = 7.455e-64
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIGSAGVVRRQAVDI P+
Sbjct:  130 RIGSAGVVRRQAVDISPL 147

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.202e-54
Identity = 117/179 (65.36%), Postives = 130/179 (72.63%), Query Frame = 2

Query:   83 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATPYWICWCC*ASSCGYFPHCAV*IK--RSIYSPLVLV-----NLLFRNIKT 598
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDAT           S G     AV I   R +   + L+        FRNIKT
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATR--------IGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKT 171

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 181.8 bits (460), Expect = 5.263e-54
Identity = 88/127 (69.29%), Postives = 107/127 (84.25%), Query Frame = 2

Query:   89 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+T
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDST 126

HSP 2 Score: 40.4318 bits (93), Expect = 5.263e-54
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI+LL TGARE+AF
Sbjct:  142 SPLRRVNQAIWLLCTGAREAAF 163

HSP 3 Score: 30.4166 bits (67), Expect = 5.263e-54
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG VRRQAVD+ P+
Sbjct:  127 RIGRAGTVRRQAVDVSPL 144

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 5.263e-54
Identity = 88/127 (69.29%), Postives = 107/127 (84.25%), Query Frame = 2

Query:   89 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+T
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDST 126

HSP 2 Score: 40.4318 bits (93), Expect = 5.263e-54
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI+LL TGARE+AF
Sbjct:  142 SPLRRVNQAIWLLCTGAREAAF 163

HSP 3 Score: 30.4166 bits (67), Expect = 5.263e-54
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG VRRQAVD+ P+
Sbjct:  127 RIGRAGTVRRQAVDVSPL 144

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 8.914e-54
Identity = 84/112 (75.00%), Postives = 101/112 (90.18%), Query Frame = 2

Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+T
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDST 126

HSP 2 Score: 40.4318 bits (93), Expect = 8.914e-54
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI+LL TGARE+AF
Sbjct:  142 SPLRRVNQAIWLLCTGAREAAF 163

HSP 3 Score: 30.4166 bits (67), Expect = 8.914e-54
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG VRRQAVD+ P+
Sbjct:  127 RIGRAGTVRRQAVDVSPL 144

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 5.627e-53
Identity = 81/111 (72.97%), Postives = 98/111 (88.29%), Query Frame = 2

Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+T
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDST 135

HSP 2 Score: 40.0466 bits (92), Expect = 5.627e-53
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI LLTTGARE++F
Sbjct:  151 SPLRRVNQAIALLTTGAREASF 172

HSP 3 Score: 32.3426 bits (72), Expect = 5.627e-53
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIGSAG VRRQAVD+ P+
Sbjct:  136 RIGSAGTVRRQAVDVSPL 153

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 1.242e-52
Identity = 86/127 (67.72%), Postives = 105/127 (82.68%), Query Frame = 2

Query:   89 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+T
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDST 126

HSP 2 Score: 40.4318 bits (93), Expect = 1.242e-52
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI+LL TGARE+AF
Sbjct:  142 SPLRRVNQAIWLLCTGAREAAF 163

HSP 3 Score: 30.4166 bits (67), Expect = 1.242e-52
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG VRRQAVD+ P+
Sbjct:  127 RIGRAGTVRRQAVDVSPL 144

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.842e-50
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 2

Query:   83 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+T
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDST 150

HSP 2 Score: 40.4318 bits (93), Expect = 1.842e-50
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRVNQAI+LL TGARE+AF
Sbjct:  166 SPLRRVNQAIWLLCTGAREAAF 187

HSP 3 Score: 30.4166 bits (67), Expect = 1.842e-50
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG VRRQAVD+ P+
Sbjct:  151 RIGRAGTVRRQAVDVSPL 168

[Close]

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.884e-50
Identity = 78/112 (69.64%), Postives = 97/112 (86.61%), Query Frame = 2

Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+T
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDST 132

HSP 2 Score: 38.1206 bits (87), Expect = 6.884e-50
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 1

Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            +PLRRVNQAI+LL TGARE++F
Sbjct:  148 APLRRVNQAIWLLCTGAREASF 169

HSP 3 Score: 30.4166 bits (67), Expect = 6.884e-50
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG VRRQAVD+ P+
Sbjct:  133 RIGRAGTVRRQAVDVAPL 150

The following BLAST results are available for this feature:

BLAST of BQ623138 vs. ExPASy Swiss-Prot

BLAST of BQ623138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66


Match Name	E-value	Identity	Description
RS5_CICAR	1.093e-65	86.55	40S ribosomal protein S5 (Fragment) OS=Cicer ariet...	[more]
RS51_ARATH	7.455e-64	78.29	40S ribosomal protein S5-1 OS=Arabidopsis thaliana...	[more]
RS52_ARATH	1.202e-54	65.36	40S ribosomal protein S5-2 OS=Arabidopsis thaliana...	[more]
RS5_HUMAN	5.263e-54	69.29	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P...	[more]
RS5_BOVIN	5.263e-54	69.29	40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=...	[more]
RS5_MOUSE	8.914e-54	75.00	40S ribosomal protein S5 OS=Mus musculus GN=Rps5 P...	[more]
RS5_NEUCR	5.627e-53	72.97	40S ribosomal protein S5 OS=Neurospora crassa GN=r...	[more]
RS5_RAT	1.242e-52	67.72	40S ribosomal protein S5 OS=Rattus norvegicus GN=R...	[more]
RS5A_DROME	1.842e-50	65.89	40S ribosomal protein S5a OS=Drosophila melanogast...	[more]
RS5_PODCA	6.884e-50	69.64	40S ribosomal protein S5 OS=Podocoryne carnea GN=R...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00229 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00229 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623138 ID=BQ623138; Name=BQ623138; organism=Citrus sinensis; type=EST; length=598bp
GGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTATTTTATCTCTCTCGC
TCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTG
GCACAATCTCAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAA
TAGGTGGACTTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATT
ATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCT
GGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGA
GAGGCTTACGAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAAT
TGATGGCTGTCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTG
ACCGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGG
TCCAAGGGAAGATGCTACCCCGTATTGGATCTGCTGGTGTTGTTAGGCGT
CAAGCTGTGGATATTTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATC
TACTCACCACTGGTGCTCGTGAATCTGCTTTTTCGTAACATAAAGACT