BQ623150

Overview
NameBQ623150
Unique NameBQ623150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:19..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.567e-79
Identity = 130/150 (86.67%), Postives = 144/150 (96.00%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGIDL+AGGKSKK+KRTAPKSDD+YLKLLVKLYRFLVRR++SNFN VILKRLFMSKVNK PLSLSRL+ FM GK+DKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKH
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKH 150          

HSP 2 Score: 52.373 bits (124), Expect = 3.567e-79
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHS+TKPYVR KGRKFE
Sbjct:  151 FGPAPGVPHSNTKPYVRHKGRKFE 174          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 3.261e-74
Identity = 124/147 (84.35%), Postives = 136/147 (92.52%), Query Frame = 2
Query:   47 DLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            DL AGGK+KK+KRT+PKS+DIYLKLLVKLYRFLVRRTDSNFN VILKRLFMSKVN+PPLSLSRLI +M+GKE KI VVVG VTDDIR Y+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKH
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKH 146          

HSP 2 Score: 56.9954 bits (136), Expect = 3.261e-74
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHSHTKPYVRSKGRKFE
Sbjct:  147 FGPAPGVPHSHTKPYVRSKGRKFE 170          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 8.020e-70
Identity = 135/186 (72.58%), Postives = 154/186 (82.80%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHLWSSSWRTTQPHQALRAIKGKEV*AC*RKEEQQGFQ 595
            MGIDL+AGGKSKK+KRTAPKSDD+YLKL VKLYRFLVRRT+S FN VILKRLFMSKVNK PLSLSRL+ FM GKEDKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKH   +        +     KG++      K + +GF+
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFK 186          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 5.047e-69
Identity = 119/151 (78.81%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKH 487
            MGIDL+AGGKSKK+KRT PKSDD+YLKLLVK  R+LVRRT+S FN VILKRLFMSKVNK PLSLSRL+ +M GK+ KIAV+VGTVTDD+R  +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKH
Sbjct:    1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKH 151          

HSP 2 Score: 49.6766 bits (117), Expect = 5.047e-69
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHSHTKPYVR  G+K E
Sbjct:  152 FGPAPGVPHSHTKPYVRQTGKKIE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.403e-56
Identity = 98/152 (64.47%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K  RT PKS DIYL+LLVKLYRFL RR+D+ FNKV+LKRLFMSK N+PPL+LSRLI  MK  G+E+KIAVVVGT+TDD+R   +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +H
Sbjct:    1 MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRH 151          

HSP 2 Score: 51.9878 bits (123), Expect = 2.403e-56
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPY+RSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYIRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.324e-56
Identity = 96/152 (63.16%), Postives = 120/152 (78.95%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K +RT PKS D+YL+LLVKLYR+L RRT + FNK+ILKRLFMSK+ +PP+SLS+++ FMK  G+E   AV+VGTVTDD R +E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKH
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKH 151          

HSP 2 Score: 51.9878 bits (123), Expect = 5.324e-56
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHSH KP VRSKGRKFE
Sbjct:  152 FGPAPGVPHSHAKPLVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 6.941e-56
Identity = 97/152 (63.82%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGTVTDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +H
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 6.941e-56
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 9.049e-56
Identity = 96/152 (63.16%), Postives = 118/152 (77.63%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +H
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 9.049e-56
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.180e-55
Identity = 92/152 (60.53%), Postives = 122/152 (80.26%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MGID +     +K  R  PKS+++YL LLVK+YRFL RR+ + FN+++LKRLFMS++NKP +SL+R+  FMK  G+E+ IAVVVGTVTDD+R Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +H
Sbjct:    1 MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRH 151          

HSP 2 Score: 56.9954 bits (136), Expect = 1.180e-55
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FGPAPGVPHSHTKPYVRSKGRKFE
Sbjct:  152 FGPAPGVPHSHTKPYVRSKGRKFE 175          
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.614e-55
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   38 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 487
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +H
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRH 151          

HSP 2 Score: 52.373 bits (124), Expect = 2.614e-55
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 3
Query:  489 FGPAPGVPHSHTKPYVRSKGRKFE 560
            FG APG PHSHTKPYVRSKGRKFE
Sbjct:  152 FGKAPGTPHSHTKPYVRSKGRKFE 175          
The following BLAST results are available for this feature:
BLAST of BQ623150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL183_ARATH3.567e-7986.6760S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_CICAR3.261e-7484.3560S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL182_ARATH8.020e-7072.5860S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL181_ARATH5.047e-6978.81Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_ICTPU2.403e-5664.4760S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_TIMBA5.324e-5663.1660S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_MOUSE6.941e-5663.8260S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]
RL18_RAT9.049e-5663.1660S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18_IXOSC1.180e-5560.5360S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_MACFA2.614e-5563.1660S ribosomal protein L18 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00241 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00241 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623150 ID=BQ623150; Name=BQ623150; organism=Citrus sinensis; type=EST; length=607bp
CGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCATGGGTATCGATT
TGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACCGCTCCCAAGTCC
GATGATATCTACCTTAAACTACTCGTCAAGTTGTACCGGTTTCTTGTTCG
AAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGAGGCTGTTTATGA
GTAAAGTCAACAAGCCACCACTTTCACTCTCCAGGCTCATTAACTTCATG
AAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGACAGTCACCGATGA
CATTAGGGCTTACGAGGTGCCGGCATTGAAGGTTACTGCTTTGAGGTTTA
CTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGAGAGTGCTTGACT
TTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAACACGGTCCTTCT
TAGAGGTCCAAAGAATGCCCGTGAGGCAGTGAAGCACCTTTGGTCCAGCT
CCTGGCGTACCACACAGCCACACCAAGCCTTACGTGCGATCAAAGGGAAG
GAAGTTTGAGCGTGCTAGAGGAAGGAGGAACAGCAGGGGTTTCAGAGTTT
AAGTTTA
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