BQ623156

Overview
NameBQ623156
Unique NameBQ623156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:391..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623156 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 3 
Query:    3 QLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 209
            QLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   81 QLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149
[Close]
BLAST of BQ623156 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.222e-30
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 3 
Query:    3 QLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 209
            QLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   80 QLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148
The following BLAST results are available for this feature:
BLAST of BQ623156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VP321_ARATH5.530e-3095.65Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH7.222e-3094.20Vacuolar protein sorting-associated protein 32 hom... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00247 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00247 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623156 ID=BQ623156; Name=BQ623156; organism=Citrus sinensis; type=EST; length=579bp
GGCAATTGCGCATTCATGATCAGATGATAATGCTAGAAGGTGCTAAAGCC
ACAACTGAGACTGTAGATGCATTGAGGACGGGAGCATCGACAATGAAGGC
TATGCAGAAAGCAACGAACATAGATGATGTGGATAAGACCATGGATGAGA
TCAATGAGCAGACCGAGAACATGAAGCAGATTCAAGAAGCATTATCAACT
CCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAATTGGAAGCAGAACT
TGAAGAACTGGAAGGTGCTGAGTTGGAAGAGCAGCTTCTACAGCCAGCTA
CAACAGCTCCTGCTGCTCCGGTTCAGGTCCCTGCTGGCAGGCAACAAGCC
CGTCCTGTTCCCCAAAAGCAGCGAACAGCTGAGGAAGATGAGCTTGCTGC
TTTACAAGCTGAGATGGCTCTTTAAGCAGGTTTTACCGCCATAATGAAGA
TATTATTTAAATAGCTGGCCGTATAATGTGGAGATTTATGCCTACTTGGA
TTACCTTCAAGATTTCTGTGTGCATTCAATGAACAGACTGTATATAAAGT
TTGCGTAACTAGTCCTGTTTGAAATATGT
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