BQ623173

Overview
NameBQ623173
Unique NameBQ623173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623173_ssr153 microsatellite BQ623173_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12816 contig Csv1_Contig12816:45..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.724e-55
Identity = 110/184 (59.78%), Postives = 133/184 (72.28%), Query Frame = 3
Query:   72 MADEHKHEE------PA-----GESVMEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 569
            MA+EHKH+E      PA      ES+M+KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LRE
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLRE 184          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.415e-54
Identity = 108/180 (60.00%), Postives = 130/180 (72.22%), Query Frame = 3
Query:   72 MADEHKHEEPAG-----------ESVMEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 569
            MADEHKHEE +            ES+MEK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WVLF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LRE
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLRE 180          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.044e-53
Identity = 106/166 (63.86%), Postives = 126/166 (75.90%), Query Frame = 3
Query:   72 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 569
            MA+EHKHEE    S+MEKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+LF+LLEY+LLTL  H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRD 159          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.486e-53
Identity = 103/166 (62.05%), Postives = 118/166 (71.08%), Query Frame = 3
Query:   72 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLR 566
            M ++HKHEE    S++EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLR 162          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.160e-48
Identity = 96/165 (58.18%), Postives = 121/165 (73.33%), Query Frame = 3
Query:   72 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLR 566
            MA+E +   P  ES+MEKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILR 162          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.733e-47
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   72 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLR 566
            MA+E +      ES+MEKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILR 162          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.431e-30
Identity = 59/113 (52.21%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  231 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 569
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWVLF+ + +H L+LVC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L++
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQD 156          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.175e-30
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 3
Query:  213 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLR 566
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+LF      LLT +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLR 161          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.428e-22
Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  222 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLL 563
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKL 132          
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.251e-18
Identity = 39/106 (36.79%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  231 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINR 548
            +LF R++ +H++LGGG  ADV LWR K +S G++    A W++F+   Y + TL+   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNK 112          
The following BLAST results are available for this feature:
BLAST of BQ623173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLA_ARATH3.724e-5559.78Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.415e-5460.00Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.044e-5363.86Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH3.486e-5362.05Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.160e-4858.18Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH3.733e-4758.79Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.431e-3052.21Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH3.175e-3052.54Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH5.428e-2239.47Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH1.251e-1836.79Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00264 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00264 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623173 ID=BQ623173; Name=BQ623173; organism=Citrus sinensis; type=EST; length=571bp
CGAGCTTCTTTCATTTCTCAAAGTTAAAAAGGTTTGAAAACACCGAGTGA
GGGATTTGTACAGAGAGCGAGATGGCTGACGAGCATAAACACGAGGAACC
AGCCGGTGAATCGGTGATGGAGAAGATAACGGAGAAGATCCACGGCCACG
ATTCGTCGTCGTCGTCATCGTCATCTGACACCGATGATGATAAGAAGTCA
TCTACATCCTCCCTCAAGACCAAAGTATTTCGTCTCTTCGGAAGAGAAAA
GCCTGTTCACAAGGTTCTTGGTGGCGGAAAACCTGCGGATGTTTTCTTAT
GGAGGAACAAGAAGATTTCAGCAGGAGTACTTGGTGGGGCTACTGCAATA
TGGGTTCTGTTTCAATTGCTTGAGTACCACCTTCTAACTCTTGTCTGTCA
CTGCCTGATTGTTGCACTTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCA
CCTTCATTAACAAGTCTCCACCACGCATTCCGGAAGTATATATCCCTGAG
GAACCAGTTTTACAGTTGGCCTCTGCACTTAGGTTTGAGATCAATAGGGC
CTTCACTCTTCTGAGGGAAAT
back to top