BQ623178

Overview
NameBQ623178
Unique NameBQ623178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10513 contig Csv1_Contig10513:551..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.416e-44
Identity = 95/197 (48.22%), Postives = 133/197 (67.51%), Query Frame = 1
Query:    4 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            YNEL  V+GMKL+ G  SPYF T+   ++C L+  L+LI+D K++N + + +     + + + LL+VAEDVE+E LG +  +      KVC +KA G  E+RKA ++DLAILTGG+V+T   GMN   F P  LG+CK+V  + D+ VI+ G+G+   I+ER EQ+RS I+ STSD    KL++RLAKLSGG AVLK
Sbjct:  217 YNELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQKPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLENFEPHMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLK 413          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.892e-43
Identity = 93/197 (47.21%), Postives = 132/197 (67.01%), Query Frame = 1
Query:    4 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            YNEL  V+GMKL+ G  SPYF T+   ++C L+  L+LI+D K++N + + +     + + + LL+VAEDVE+E LG +  +      KVC +KA G  E+RKA ++DLAILTGG+V+T   GMN     P  LGSCK+V  + D+ VI+ G+G+   I+ER +Q+RS ++ STSD    KL++RLAKLSGG AVLK
Sbjct:  217 YNELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLENVEPHMLGSCKKVTVSKDDTVILDGAGDKKSIEERADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLK 413          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.197e-42
Identity = 94/197 (47.72%), Postives = 132/197 (67.01%), Query Frame = 1
Query:    4 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +NEL  V+GMKL+ G  SPYF T++  ++C LD  L+LI++ KIS+ N I +     + + + LL+V+EDVE++ L  +  +      KVC IKA G  E+RKA ++DLA LTGG+V+T   GMN        LG+CK+V  + D+ VI+ G+G+   I+ERCEQ+RS I+LSTSD    KL++RLAKLSGG AVLK
Sbjct:  214 FNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLK 410          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.454e-42
Identity = 93/197 (47.21%), Postives = 132/197 (67.01%), Query Frame = 1
Query:    4 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +NEL  V+GMKL+ G  SPYF T++  ++C LD  L+LI++ KIS+ N + +     + + + LL+V+EDVE++ L  +  +      KVC IKA G  E+RKA + DLA+LTGGQ++T   GMN        LGSCK++  + D+ VI+ G+G+   I+ERCEQ+RS I+LSTSD    KL++RLAKLSGG AVLK
Sbjct:  215 FNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLHDLAVLTGGQLITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLK 411          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.303e-42
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL  V+GMKL+ G  SPYF T++  ++C LD  L++IY+ KIS+ N + +     + + + LL+V+EDVE+E L  +  +      KVC IKA G  E+RKA ++DLA+LTGGQV+T   GMN        LGSCK++  + D+ VI+ G+G+   I+ERC+Q+RS I+ STSD    KL++RLAKLSGG AVLK
Sbjct:  216 NELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKISSINAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGQVITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKAIEERCDQIRSGIEASTSDYDKEKLQERLAKLSGGVAVLK 411          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.940e-39
Identity = 88/197 (44.67%), Postives = 126/197 (63.96%), Query Frame = 1
Query:    4 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +NEL  V+GMK++ G  SPYF T+   ++C L+  L+LI++ KISN N + +     + + + LL+VAEDVE++ L  +  +      KVC +KA G  E+RKA + DLA LTG QV+T   GMN         G+CK+V  + D+ V++ G+G+   I ERCEQ+RS ++ STSD    KL++RLAKLSGG AVLK
Sbjct:  215 FNELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEKKISNINAMVKVLELALKKQRPLLIVAEDVESDALATLILNKLRANIKVCAVKAPGFGENRKANLHDLAALTGAQVITEELGMNLDNIDLSMFGNCKKVTVSKDDTVVLDGAGDKQAIGERCEQIRSMVEASTSDYDKEKLQERLAKLSGGVAVLK 411          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.390e-37
Identity = 88/198 (44.44%), Postives = 126/198 (63.64%), Query Frame = 1
Query:    4 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIG-GSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            +NEL  V+GMK++ G  SPYF T++  ++C L+  L+LI++ KISN N + +     +   +SLL+VA D+E++ L  +  +      KVC +KA G  E+RKA M DLA LTG QV+T   GMN        LG+CK++  + D+ V +G G+G+   I ERCEQ+RS ++ S SD    KL++RLAKLSGG AVLK
Sbjct:  217 FNELEVVEGMKIDRGYISPYFITNQKNQKCELEDPLILIHEKKISNLNSMVKVLELALKSQRSLLIVAADLESDALAVLILNKLRAGIKVCAVKAPGFGENRKANMHDLATLTGAQVITEELGMNLEKIDLSMLGNCKKITVSKDDTVFLGWGAGDKKAIGERCEQIRSMVEASESDYDKEKLQERLAKLSGGVAVLK 414          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   13 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 579
            +  V+GM+ + G  S YF T   K ECV++   +LIYD KISN         P +  G+ LLV+AEDV++E L  +  +   +  K+C +KA G  + RKA++ED+A+LTGG V++   G+         LG+C +V  + DN  I+ G+G   +IQER  Q+++ IK +TSD    KL++RLAKLSGG AVL
Sbjct:  187 IGVVEGMQFDRGYLSAYFVTDTEKMECVMEHPYILIYDKKISNLKDFLPILEPAVQSGRPLLVIAEDVDSEALTTLVVNRLRSQLKICAVKAPGFGDRRKAMLEDIAVLTGGIVISEEKGLKLEQATLEMLGTCDKVTVSKDNTTIVNGAGAKENIQERINQIKAEIKNTTSDYDKEKLQERLAKLSGGVAVL 379          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.434e-35
Identity = 81/196 (41.33%), Postives = 123/196 (62.76%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLK 582
            NEL  V+GMKL  G  SPYF T +  ++C L+  ++LI++ KIS+ N + +     +   + LL+VAEDVE++ L  +  +      KVC IKA G  ++RKA ++DLA+LTG +V++   G++     P  LG+ K+V  T D+ +I+ G G+   I+ERCE+LRS  + STS    +K ++RL+KLSGG AV K
Sbjct:  215 NELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEKKISDINSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILNKHHGGLKVCAIKAPGFGDNRKASLDDLAVLTGAEVISEERGLSLEKIRPELLGTAKKVTVTRDDTIILHGGGDKKLIEERCEELRSANEKSTSTFDQEKTQERLSKLSGGVAVFK 410          
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Match: CH60_CHRVI (60 kDa chaperonin OS=Chromatium vinosum GN=groL PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.205e-34
Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 1
Query:    7 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQACLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLK 582
            NEL+ V+GM+ + G  SPYF  ++  +   LD   +L+YD KISN   +          G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA+++D+AILTG  V++   G++        LG+ KRV    D   II GSG  +DI+ RCEQ+R+ ++ ++SD    KL++RLAKL+GG AV+K
Sbjct:  185 NELDVVEGMQFDRGYLSPYFINNQQSQSAELDAPYILLYDKKISNIRDLLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGLSLEKATLTDLGTAKRVQVGKDETTIIDGSGSEIDIKARCEQIRAQVEETSSDYDREKLQERLAKLAGGVAVIK 380          
The following BLAST results are available for this feature:
BLAST of BQ623178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH61_MAIZE3.416e-4448.22Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH62_MAIZE2.892e-4347.21Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60A_ARATH3.197e-4247.72Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH62_CUCMA5.454e-4247.21Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH61_CUCMA9.303e-4247.45Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH60B_ARATH1.940e-3944.67Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH60_BRANA1.390e-3744.44Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60_BACV83.786e-3541.4560 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH60C_ARATH8.434e-3541.33Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH60_CHRVI3.205e-3440.3160 kDa chaperonin OS=Chromatium vinosum GN=groL PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623178 ID=BQ623178; Name=BQ623178; organism=Citrus sinensis; type=EST; length=613bp
GGCTATAATGAATTAAATTTTGTTAAGGGAATGAAACTAGAGTGGGGTCT
TAAATCCCCATACTTCTTCACCCATAAGAATAAAAAAGAATGTGTTTTAG
ATGGTGCATTGGTTTTGATCTATGACACGAAAATTTCAAACTCCAATGTT
ATCAGGCAAGCATGTTTGCCATGTATGATGCAGGGACAAAGCTTATTGGT
TGTTGCTGAAGATGTTGAAAACGAAGTTCTAGGAGATATTGCGACAGACT
TCACCTGTACTACTGAAAAGGTTTGTATCATCAAAGCTGCTGGATTGGCA
GAAGATAGGAAGGCCATCATGGAGGACCTTGCAATTCTCACAGGAGGCCA
GGTTTTAACTGGAGGCTCAGGTATGAACTCTACGTATTTTGTGCCTCTAA
AGCTTGGCTCATGCAAAAGGGTTATAGCAACAATGGATAATGTTGTTATC
ATTGGTGGGTCTGGTGAATTGGTAGACATTCAAGAAAGATGTGAACAGCT
GAGATCTACAATAAAATTGAGCACTTCGGACAAGTTGAAAGATCGCCTTG
CAAAACTTTCTGGTGGATATGCCGTTTTGAAGGGTTGTGGACATGGGTAA
AGCTGAAGTGCGT
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