BQ623219

Overview
NameBQ623219
Unique NameBQ623219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623219 vs. ExPASy Swiss-Prot
Match: TSNAX_RAT (Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 62/204 (30.39%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    4 SKKVIFQVHRI-SRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEP-----------------LQINVLDYLLGLADLTGELMRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVFENRECLLECACERIRV 561
            SK+ IF +HRI S  + EE+L ++E+ L  V+ + + ++ +EL G D  +  RA + G+QEYVEA +F  F RT +              +D + +                  L+I  +DYLLG+ADLTGELMR+ I  + +G++D   ++ +F R +Y   + +        ++  K+ T+ QS+ +     +E AC  ++V
Sbjct:   67 SKRTIFLLHRITSAPDMEEILTESESKLDGVRQKML-QVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRTRSLISMEEINRQLTFTTDDSGKESKAPPADGQDKQLVTWRLKITPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIG--NTGPYEVSKKLYTLKQSLSK-----VENACYALKV 262          
BLAST of BQ623219 vs. ExPASy Swiss-Prot
Match: TSNAX_MOUSE (Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 63/204 (30.88%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    4 SKKVIFQVHRI-SRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSD--------PAIE---------PLQINVLDYLLGLADLTGELMRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVFENRECLLECACERIRV 561
            SK+ IF +HRI S  + EE+L ++E+ L  V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +              ++        P  E          L++  +DYLLG+ADLTGELMR+ I  + +G++D   ++ +F R +Y   + +        ++  K+ T+ QS+ +     +E AC  ++V
Sbjct:   67 SKRTIFLLHRITSAPDMEEILTESESKLDGVR-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFTAEDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIG--NTGPYEVSKKLYTLKQSLAK-----VENACYALKV 262          
BLAST of BQ623219 vs. ExPASy Swiss-Prot
Match: TSNAX_MACFA (Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 62/204 (30.39%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    4 SKKVIFQVHRI-SRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSD--------PAIEP---------LQINVLDYLLGLADLTGELMRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVFENRECLLECACERIRV 561
            SK+ IF +HRI S  + E++L ++E  L  V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +              +D        P+ +          L++  +DYLLG+ADLTGELMR+ I  + +G++D   ++ +F R +Y   + +        ++  K+ T+ QS+ +     +E AC  ++V
Sbjct:   67 SKRTIFLLHRITSAPDMEDILTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTDDNGKENKTPSSDTQDEQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIG--NTGPYEVSKKLYTLKQSLAK-----VENACYALKV 262          
BLAST of BQ623219 vs. ExPASy Swiss-Prot
Match: TSNAX_PONAB (Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 61/204 (29.90%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    4 SKKVIFQVHRI-SRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSD--------PAIEP---------LQINVLDYLLGLADLTGELMRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVFENRECLLECACERIRV 561
            SK+ IF +HRI S  + E++L ++E  L  V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +              ++        P+ +          L++  +DYLLG+ADLTGELMR+ I  + +G++D   ++ +F R +Y   + +        ++  K+ T+ QS+ +     +E AC  ++V
Sbjct:   67 SKRTIFLLHRITSAPDMEDILTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIG--NTGPYEVSKKLYTLKQSLAK-----VENACYALKV 262          
BLAST of BQ623219 vs. ExPASy Swiss-Prot
Match: TSNAX_HUMAN (Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 61/204 (29.90%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    4 SKKVIFQVHRI-SRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSD--------PAIEP---------LQINVLDYLLGLADLTGELMRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVFENRECLLECACERIRV 561
            SK+ IF +HRI S  + E++L ++E  L  V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +              ++        P+ +          L++  +DYLLG+ADLTGELMR+ I  + +G++D   ++ +F R +Y   + +        ++  K+ T+ QS+ +     +E AC  ++V
Sbjct:   67 SKRTIFLLHRITSAPDMEDILTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIG--NTGPYEVSKKLYTLKQSLAK-----VENACYALKV 262          
The following BLAST results are available for this feature:
BLAST of BQ623219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TSNAX_RAT4.567e-1730.39Translin-associated protein X OS=Rattus norvegicus... [more]
TSNAX_MOUSE1.736e-1630.88Translin-associated protein X OS=Mus musculus GN=T... [more]
TSNAX_MACFA2.267e-1630.39Translin-associated protein X OS=Macaca fascicular... [more]
TSNAX_PONAB6.595e-1629.90Translin-associated protein X OS=Pongo abelii GN=T... [more]
TSNAX_HUMAN6.595e-1629.90Translin-associated protein X OS=Homo sapiens GN=T... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00310 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00310 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623219 ID=BQ623219; Name=BQ623219; organism=Citrus sinensis; type=EST; length=603bp
AATAGCAAAAAAGTCATTTTCCAGGTGCACAGAATCAGTAGGGACAACAA
AGAGGAAGTTTTGAAAAAGGCAGAGGCCGATTTAGTAGCAGTGAAGGATC
AGTATATTTCCCGATTGGTGAAAGAACTGCAGGGGACTGATTTTTGGAAA
CTAAGACGAGCCTACTCTCCTGGGGTGCAAGAGTATGTTGAAGCTGCAAC
ATTCTGTAAATTCTGCAGGACTGGAACTCTTTTGGATCTTGAAGAGCTAA
ATGCTGGTTTACTACCACTCAGTGATCCAGCTATCGAGCCTTTGCAAATC
AATGTCCTCGACTATCTCCTGGGGCTTGCGGACTTGACAGGAGAACTGAT
GCGGTTGGCAATTGGTCGAATATCAGACGGGGAGCTTGATTTTGCTGAGA
AGATATGCAGGTTTTCACGTGACATCTATAGGGAGCTGACACTTGTTGTT
CCACTTATGGATAATAATTCTGACATGAAGACAAAGATGGATACAATGCT
TCAGAGTGTGTTTGAAAATAGAGAATGCTTGCTTGAGTGTGCATGTGAGA
GGATCAGAGTATACACTGCTTGGATCCAGTGATCCAAGTTTCCTAATGGG
GGT
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