BQ623220

Overview
NameBQ623220
Unique NameBQ623220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623220_ssr256 microsatellite BQ623220_ssr256:256..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:617..1054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.943e-18
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:  102 KNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.068e-18
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT            AIEISG
Sbjct:   90 KNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.638e-17
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:   94 KNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.638e-17
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:   15 KNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.638e-17
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT            AIEISG
Sbjct:   91 KNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.446e-17
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:   95 KNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.878e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT            AIEISG
Sbjct:   91 KNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.677e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:   95 KNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.677e-17
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT            +IEISG
Sbjct:   99 KNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 KNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 181
            KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT            AIEISG
Sbjct:   92 KNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
The following BLAST results are available for this feature:
BLAST of BQ623220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HSP16_SOYBN6.943e-1875.0018.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16C_ORYSJ9.068e-1873.3316.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP13_SOYBN2.638e-1773.3317.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOYBN2.638e-1773.33Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS16B_ORYSJ2.638e-1771.6716.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP11_SOLLC3.446e-1770.0017.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16A_ORYSJ5.878e-1770.0016.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP12_SOLPE7.677e-1770.0017.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_PEA7.677e-1770.0018.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS16A_WHEAT1.003e-1670.0016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00311 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623220 ID=BQ623220; Name=BQ623220; organism=Citrus sinensis; type=EST; length=438bp
GAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGA
GGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAGGTTAAGGCCAGC
ATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAAACAGGAGGAGAAGAA
ACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAGTGATAAGTGTAAATG
TTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAA
GCCCTTGTGTGTGTGTGTGTGTGTTTGCAAGAGCTTCCCTTCCCCCCTGT
TTAATTTGATGTGATTATGTTTGTGTGTTTGCAAGAGCTTCAGGAGCCAG
TCTCAAGCGTTGTAACTAGTTTTTTAAATGATAAAAGTGTGATGCAATAA
AATATATTTTGTAATGCGAAAAAAAAAAAAAAAAAAAA
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