BQ623228

Overview
NameBQ623228
Unique NameBQ623228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2295 contig Csv1_Contig2295:73..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.053e-47
Identity = 98/133 (73.68%), Postives = 108/133 (81.20%), Query Frame = 3
Query:    3 SSLSLKPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 392
            SS++LKPA FTV K+AARGLPSL  A+ SFKIVA G  KIKTDKP+GING MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    8 SSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.823e-47
Identity = 93/131 (70.99%), Postives = 106/131 (80.92%), Query Frame = 3
Query:    9 LSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 392
            +SLKPAPF+V K+A +GLPSLA++S  F++ A G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:    6 MSLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.423e-46
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 3
Query:    3 SSLSLKPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 392
            SS++LKPA FTV K +ARGLPSL +   +SF+IVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    8 SSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.287e-45
Identity = 94/133 (70.68%), Postives = 107/133 (80.45%), Query Frame = 3
Query:    3 SSLSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 392
            SSLSLKP  FT+ K++ +GLPSLA++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    7 SSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.341e-45
Identity = 93/133 (69.92%), Postives = 105/133 (78.95%), Query Frame = 3
Query:    3 SSLSLKPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 392
            SSLSLKP  FT+ K + +GLPSL ++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:    7 SSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 89/134 (66.42%), Postives = 101/134 (75.37%), Query Frame = 3
Query:    3 SSLSLKPAPFTVG-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 392
            SSLSLKP+ F V  KSA +GLPSL+++S  F + A G  KIK DKP GI GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:    7 SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.565e-33
Identity = 74/131 (56.49%), Postives = 90/131 (68.70%), Query Frame = 3
Query:    3 SSLSLKPAPFTV-GKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGINGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 389
            +SL+LKP+   +  +S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:    7 ASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of BQ623228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH1.053e-4773.68Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC6.823e-4770.99Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM4.423e-4670.15Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU1.287e-4570.68Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC8.341e-4569.92Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL1.472e-4166.42Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU9.565e-3356.49Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00319 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00319 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623228 ID=BQ623228; Name=BQ623228; organism=Citrus sinensis; type=EST; length=590bp
CTTCTTCGTTGAGCCTGAAACCAGCTCCTTTCACTGTGGGGAAATCAGCA
GCGAGAGGCCTTCCCTCTCTTGCTAAAACTTCATTCAAAATTGTGGCTAA
AGGCGGCAAGATCAAAACCGACAAACCCTATGGAATAAATGGTGGTATGG
ATTTGAGGGAAGGTCTTGATGCATCCGGCAGGAAGGCTAAGGGGAAAGGT
GTTTACCAATTTGTTGACAAATACGGTGCCAATGTTGATGGATACAGTCC
TATCTACAACGAGAATGACTGGTCTCCCAGTGGTGATGTCTATACTGGTG
GTGCAACTGGCTTGGCAATCTGGGCTGTTACTCTTGCCGGTCTTCTTGCA
GGAGGAGCACTTCTCGTCTACAACACAAGTGCTTTGGCACAGTAGATGAA
TTTCAATCAATGTTACATTATTATCTCTATTTTTTATAACTTGTCAATGT
TGCTGTTAAATGTACCTTCCACAGCTACCTTCGTGTATCTATTTTGTGTA
ATGTTTTGGGTGGATTTAAATTGAGACATATAGCCATCTATAATTTGGTA
CTCCCTTCTGTGCCTTCATTGAAGATGGTTGGCCTGGTTT
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