BQ623229

Overview
NameBQ623229
Unique NameBQ623229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11438 contig Csv1_Contig11438:126..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.720e-69
Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 470
            PRNFR      RGEKGIGDGTVSYGMDDGDDIYMRSWTGT+IGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNH+TGVV+ KKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct:   12 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.846e-68
Identity = 118/134 (88.06%), Postives = 123/134 (91.79%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 470
            PRNFR      RGEKGIGDGTVSYGMDDGDDIYMRSWTGT+IGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CVNHETGVV+PKKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct:   13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.982e-54
Identity = 96/131 (73.28%), Postives = 108/131 (82.44%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR      RGEKGIGDGTVSYGMDD DDIYM+SWTGT++GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CVN ETGVVEP  F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Sbjct:   11 PRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 93/131 (70.99%), Postives = 107/131 (81.68%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGT++GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CVN E GVV+P  F +L+NW+RE+TMED+L QLKKEM +  NRKL QP EG
Sbjct:   11 PRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEG 141          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.083e-40
Identity = 71/134 (52.99%), Postives = 97/134 (72.39%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 470
            PRNF        GEK  GDGT+SYG++  DDI + SW GT+IGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CVN + GVV+PK   +L+NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Sbjct:    5 PRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: MMS2_SCHPO (Ubiquitin-conjugating enzyme spm2 OS=Schizosaccharomyces pombe GN=spm2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 70/134 (52.24%), Postives = 93/134 (69.40%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 470
            PRNF+      +GEKG+G+ + SYG+ + DDI +  W  T++GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+  V+ ETG V P K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Sbjct:    5 PRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V1_HUMAN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   12 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V1_BOVIN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +LA WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   12 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T++E RIY LK+ C   YPE PPSVRF +R+NM+ V+   GVV+P+   +LA WQ  ++++ IL +L++ M +  N KL QPPEG
Sbjct:   12 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Match: UB2V1_CHICK (Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallus gallus GN=UBE2V1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 3
Query:   69 PRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 461
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +LA WQ  ++++ +L +L++ M +  N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSFSIKVVLQELRRLMMSKENMKLPQPPEG 140          
The following BLAST results are available for this feature:
BLAST of BQ623229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1C_ARATH3.720e-6988.81Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UEV1D_ARATH1.846e-6888.06Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1A_ARATH1.982e-5473.28Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UEV1B_ARATH1.855e-5270.99Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UBE2V_DICDI8.083e-4052.99Probable ubiquitin-conjugating enzyme E2 variant O... [more]
MMS2_SCHPO4.904e-3752.24Ubiquitin-conjugating enzyme spm2 OS=Schizosacchar... [more]
UB2V1_HUMAN2.975e-3448.85Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo ... [more]
UB2V1_BOVIN2.975e-3448.85Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos t... [more]
UB2V1_MOUSE5.074e-3448.85Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus m... [more]
UB2V1_CHICK8.656e-3448.09Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00320 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00320 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623229 ID=BQ623229; Name=BQ623229; organism=Citrus sinensis; type=EST; length=678bp
TCTCAGCTTACCCATCATCAAAATCGCAACCATGACGCGTAGGCTCAGGA
GGATCCAGTGTCGTGGTCCCTCGGAACTTCAGATTGTTGGAGGAACTTGA
ACGCGGAGAAAAAGGTATTGGAGATGGCACTGTCAGCTATGGAATGGATG
ATGGAGATGACATTTACATGCGCTCTTGGACTGGCACCGTTATCGGTCCT
CACAATACTGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGA
TAAAGATTATCCAGAGAAGCCACCAAGTGTTCGTTTTCATTCACGAATCA
ACATGACTTGTGTTAACCATGAAACTGGAGTGGTGGAACCTAAAAAGTTT
GGACTTCTTGCGAATTGGCAGCGAGAGTACACCATGGAGGATATACTCAC
ACAACTGAAAAAGGAGATGGCAGCCCCACACAATCGGAAGCTGGTTCAAC
CTCCTGAGGGTACCTACTTCTAGCTTCTAAGATCATATAGGTATCATGGG
GCTTATTGCATATTACAATATGCAATATATAGATTGTATTCCTGTGTTGA
TGTTAAGAACATAGAAGGAAATGCCTGACAGGGCCTTTTCCAATTACATC
TCCATGGCTTCATCATCGGTTTGGCTCTTTCTTTTTCTTTTTTCAACTGT
ATGGAAGGATGCTGTTGATTAATGGGAT
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