BQ623243

Overview
NameBQ623243
Unique NameBQ623243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:368..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.280e-15
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIALSKKFVK+V+WYDNEWGYS+RV D
Sbjct:  288 FVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.977e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIALSK FVKLVSWYDNEWGYS+RV D
Sbjct:  277 FVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVID 317          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.633e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGD+RSSIFDAKAGIALS KFVKLVSWYDNEWGYS+RV D
Sbjct:  290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVD 330          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.663e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYSTRV D
Sbjct:  290 FVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVD 330          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.663e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRV D
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.521e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYSTRV D
Sbjct:  288 FVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            FVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV D
Sbjct:  288 FVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVD 328          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS+RV D
Sbjct:  291 FIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVID 331          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F+GDSRSSIFDA+AGIALS  FVKLVSWYDNEWGYS+RV D
Sbjct:  291 FIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVD 331          
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVGD 124
            F GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRV D
Sbjct:  256 FQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVD 296          
The following BLAST results are available for this feature:
BLAST of BQ623243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3PC_CRAPL2.280e-1590.24Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC2.977e-1592.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH6.633e-1590.24Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL8.663e-1590.24Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA8.663e-1590.24Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA2.521e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU4.299e-1487.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA4.299e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY4.299e-1485.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU4.299e-1487.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00334 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00334 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623243 ID=BQ623243; Name=BQ623243; organism=Citrus sinensis; type=EST; length=154bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGGGGATTTTGATTGGCCACATGGCGAAGACCC
AGTA
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