BQ623244

Overview
NameBQ623244
Unique NameBQ623244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8808 contig Csv1_Contig8808:5..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.349e-21
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN P   A GF+ Y +F+ AA  +    FGT+    + ++E+AAFLG    +T+ G+  A  GP AWG C+ KE +P+  YC    +  YPC PG SY+G+
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGR 114          

HSP 2 Score: 38.5058 bits (88), Expect = 1.349e-21
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G L L WNYNYG  GEAL+V++L
Sbjct:  113 GRGPLQLSWNYNYGPCGEALRVNLL 137          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.989e-21
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  228 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            +S    + QF+++   RN     A GF+ Y++FITAA  +   GFGT+      +KEVAAF G    +T+ G+  A  GP +WG C+ +E +P   YC+     T+PC  G  Y+G+
Sbjct:   86 LSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEP--SATWPCASGKRYYGR 198          

HSP 2 Score: 34.6538 bits (78), Expect = 4.989e-21
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L WNYNYG  G A+ VD+L
Sbjct:  197 GRGPMQLSWNYNYGLCGRAIGVDLL 221          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.146e-20
Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 3
Query:  162 GKKLCDKGWECK--GW----SEYC--------CNQT-------ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            G  LC  G  C   GW      YC        C  T       +S      QF+++   RN     A GF+ Y +FI AA  +   GFGT+      +KE+AAF G    +T+ G+  A  GP +WG C+ +E +P+  YC    +  +PC  G SY+G+
Sbjct:   28 GGALCPNGLCCSEFGWCGDTEAYCKQPGCQSQCGGTPPGPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAE--WPCASGKSYYGR 183          

HSP 2 Score: 34.2686 bits (77), Expect = 3.146e-20
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L WNYNYG+ G A+  D+L
Sbjct:  182 GRGPMQLSWNYNYGQCGRAIGSDLL 206          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.365e-19
Identity = 51/186 (27.42%), Postives = 89/186 (47.85%), Query Frame = 3
Query:   72 VVLFATAILSVLVIV---HGDESSVKPLVKIVKGKKLCDK-GWECKGWSEYC---CNQT----------ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            +++++  ++ +L++V   +G++   +    +  G   C + GW C   ++YC   C             +S       F+ +   RN     A GF+ Y +FI AA  Y    FG +      ++E+AAFLG    +T+ G+  A  GP AWG C+ +E +P+  YC    +  +PC PG  Y+G+
Sbjct:    8 MMIWSVGVVWMLLLVGGSYGEQCGRQAGGALCPGGNCCSQFGW-CGSTTDYCGPGCQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQ--FPCAPGQQYYGR 187          

HSP 2 Score: 35.8094 bits (81), Expect = 7.365e-19
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + WNYNYG+ G A+ VD+L
Sbjct:  186 GRGPIQISWNYNYGQCGRAIGVDLL 210          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.374e-19
Identity = 53/181 (29.28%), Postives = 83/181 (45.86%), Query Frame = 3
Query:   66 GSVVLFATAILSVLVIVHGDESSVKPLVKIVKGKKLCDK-GWECKGWSEYC-------CNQT--ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            G   L A  +LS++++   ++   +   ++  G   C K GW C   ++YC       C+ T  I        F ++   RN       GF+ Y +FI AA  +   GFGT+      ++E+AAFL     +T+ G+  A  GP AWG CY +E      YC    +  +PC  G  Y+G+
Sbjct:    2 GLWALVAFCLLSLILVGSAEQCGGQAGGRVCPGGACCSKFGW-CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFP--GFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQ--WPCAAGRKYYGR 177          

HSP 2 Score: 31.9574 bits (71), Expect = 7.374e-19
Identity = 11/25 (44.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + +NYNYG+ G+A+ VD++
Sbjct:  176 GRGPIQISYNYNYGQAGKAIGVDLV 200          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.609e-19
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  228 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            +S       + +LF  ++     A GF+ Y SF+ AA  +    F  +      ++EVAAFL  +  +T+ G+  A  GP AWGLCY +E++P   YCD   K  +PC PG SYHG+
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPGKSYHGR 162          

HSP 2 Score: 31.187 bits (69), Expect = 9.609e-19
Identity = 13/34 (38.24%), Postives = 17/34 (50.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDILTTQST*KQC 675
            G G + + WN+NYG  G+AL  D L        C
Sbjct:  161 GRGPIQISWNFNYGPAGQALGFDGLRNPEIVANC 194          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.561e-18
Identity = 48/153 (31.37%), Postives = 71/153 (46.41%), Query Frame = 3
Query:  162 GKKLCDK-GWECKGWSEYC---CNQT----------ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            G   C + GW C   ++YC   C             +S       F+ +   RN     A GF+ Y +FI AA  Y    FG +      ++E+AAFLG    +T+ G+  A  GP AWG C+ +E +P+  YC    +  +PC PG  Y+G+
Sbjct:   40 GGNCCSQFGW-CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQ--FPCAPGQQYYGR 186          

HSP 2 Score: 35.8094 bits (81), Expect = 3.561e-18
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + WNYNYG+ G A+ VD+L
Sbjct:  185 GRGPIQISWNYNYGQCGRAIGVDLL 209          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 6.024e-18
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  255 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            F+ +   RN     A GF+ Y +F+ AA+ ++  GFGT+ G    ++EVAAFL     +T+ G+  A  G  AWG C+ +E      YC    +  +PC PG SY+G+
Sbjct:   86 FDRMLLHRNDGACQAKGFYTYDAFVAAASAFR--GFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQ--WPCAPGKSYYGR 189          

HSP 2 Score: 30.8018 bits (68), Expect = 6.024e-18
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L  NYNYG  G A+ VD+L
Sbjct:  188 GRGPIQLSHNYNYGPAGRAIGVDLL 212          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.873e-18
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  225 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            ++S      QF+ +   RN     A GF+ Y +F+ AAA +   GFGT+      ++EVAAFL     +T+ G+  A  G  AWG C+ +E   +  YC    +  +PC PG  Y+G+
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGR 137          

HSP 2 Score: 30.8018 bits (68), Expect = 7.873e-18
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + L  NYNYG  G A+ VD+L
Sbjct:  136 GRGPIQLSHNYNYGPAGRAIGVDLL 160          
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.890e-18
Identity = 43/120 (35.83%), Postives = 57/120 (47.50%), Query Frame = 3
Query:  219 NQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGQ 578
            +Q IS       FE +   RN     A GF+ Y +FITA   +    FGT+       KE+AAFL     +T+ G+  A  GP +WG CYN+E      YC       +PC PG  Y G+
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCAS--SQQWPCAPGKKYFGR 117          

HSP 2 Score: 29.6462 bits (65), Expect = 7.890e-18
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  574 GSGALPLYWNYNYGETGEALKVDIL 648
            G G + + +NYNYG  G A+ V++L
Sbjct:  116 GRGPIQISYNYNYGAAGSAIGVNLL 140          
The following BLAST results are available for this feature:
BLAST of BQ623244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHIT_CARPA1.349e-2138.89Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH4.989e-2136.75Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_BRANA3.146e-2032.50Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU7.365e-1927.42Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI7.374e-1929.28Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI10_ORYSJ9.609e-1936.75Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI5_PHAVU3.561e-1831.37Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI1_HORVU6.024e-1836.1126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_HORVU7.873e-1833.9026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHID_SOLLC7.890e-1835.83Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00335 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00335 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623244 ID=BQ623244; Name=BQ623244; organism=Citrus sinensis; type=EST; length=677bp
GAAATTAAATTTCTAAACGTAGCTCATTTAATTTCCTCCCATTCATTTAG
CTATGAAGCTCAAATGGCAGCGTAGTACTTTTTGCAACGGCAATTTTATC
AGTGCTAGTCATTGTGCATGGCGATGAATCTTCAGTGAAGCCATTAGTGA
AGATTGTGAAGGGCAAGAAATTGTGTGACAAAGGGTGGGAGTGTAAAGGA
TGGTCTGAGTATTGCTGCAATCAAACGATATCGGATTACTTTCAGACTTA
CCAATTTGAGAACCTTTTTGCAAAGCGTAACACCCCTGTGGCTCATGCTG
TTGGGTTTTGGGACTACCATTCTTTTATAACCGCTGCTGCTTTATATCAG
CCTCATGGGTTTGGTACCAGTGCAGGAAAGCTCATGGGTCAAAAGGAAGT
TGCTGCTTTTCTTGGCCACGTTGGAAGCAAAACCTCGTGTGGGTATGGAG
TGGCAACTGGTGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAGATG
AGTCCTAACCAGATATACTGCGATGATGACTTCAAATACACATATCCTTG
CACTCCTGGAGTTTCATATCATGGGCAGCGGTGCCTTGCCCCTCTACTGG
AACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAGTTGATATATTGAC
CACCCAGAGTACATAGAAACAATGCGA
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