BQ623252

Overview
NameBQ623252
Unique NameBQ623252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1944 contig Csv1_Contig1944:524..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.989e-37
Identity = 73/92 (79.35%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            +I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct:  139 EIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.256e-35
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAKIKSTPEAEKY+A T   L DVL+K+G
Sbjct:  126 DIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.798e-35
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAK+KSTPEAEKY+A T   L DVL+K+G
Sbjct:  122 DIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 4.773e-35
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            DI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPKDEK+SLK+LT KLF TI NLD+AAK KS  +AEKYYAETVS LN+VL+K+G
Sbjct:  133 DIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.892e-34
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDHAAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct:  141 EILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:  126 DIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:  126 DIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217          
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.139e-28
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLT-GKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 276
            +I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK++KQSLK  + GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVLSK+G
Sbjct:  139 EIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKIG 231          
The following BLAST results are available for this feature:
BLAST of BQ623252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH2.989e-3779.35Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_MAIZE1.256e-3577.17Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE2.798e-3576.09Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH4.773e-3578.26Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_SPIOL6.892e-3473.91Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ1.437e-3170.65Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI1.437e-3170.65Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ONOVI1.139e-2868.82Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00343 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00343 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623252 ID=BQ623252; Name=BQ623252; organism=Citrus sinensis; type=EST; length=476bp
GATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCTATGT
TCAGAATGATCTCCGTCTCAGGGCCTCATACCTTCGCTATGACCTCAACA
CTATCATTTCTGCTAAGCCCAAAGATGAGAAACAATCCCTCAAGAACCTC
ACTGGAAAGCTCTTCCAGACCATCGGCAATCTTGACCATGCGGCAAAGAT
TAAGAGCACTCCTGAAGCAGAGAAATACTATGCGGAGACTGTATCTACCC
TGAACGATGTTCTCTCCAAGGTTGGCTAAGCAGAATTAATATAATCTGAT
GTAAACTATATTTTTCATTTTGTGAGGCAACAACTTCTGTGAATTTTATT
GCAAGCTGGCGTTCCGCTCAAAGTATCGAGAATAATTTGTCCAGGGTGAA
ATGTCTATAATTTTAACTGCTAAGAAACTGGCAGGCAGGCCCTCAAATAT
GGAGCATCAAAAAAAAAAAAAAAAAA
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