BQ623268

Overview
NameBQ623268
Unique NameBQ623268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623268 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.204e-35
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    1 PAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 258
            P Q L + QPMRRK +GALGA+C FIGS TNLIMVT+TTLMLFAGRFGLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLAC
Sbjct:   24 PVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLAC 109          
BLAST of BQ623268 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.437e-34
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 1
Query:    1 PAQSLVAAQPM-RRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 258
            P Q LVAAQPM RRK  GALG RC FIGS TN+IMV +TTLMLFAGRFGLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLAC
Sbjct:   23 PIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLAC 109          
BLAST of BQ623268 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 1
Query:    7 QSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 258
            +S+     +RR+ S   G RC +IGS TNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLAC
Sbjct:   24 RSMATLPSLRRRRSQ--GIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLAC 105          
BLAST of BQ623268 vs. ExPASy Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   70 GFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL--EVRDSGLQTGDPAGFTLADTLA 255
            GFIGS TNLIMV +TT  L A RFGLAP+  +  TAGLKL      +G+ + DPAGFT+ D LA
Sbjct:   28 GFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLA 91          
The following BLAST results are available for this feature:
BLAST of BQ623268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAK_ARATH2.204e-3584.88Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_MEDSA2.437e-3486.21Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_HORVU1.530e-2877.38Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_CHLRE5.842e-1257.81Photosystem I reaction center subunit psaK, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00359 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00359 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623268 ID=BQ623268; Name=BQ623268; organism=Citrus sinensis; type=EST; length=607bp
CCTGCACAAAGCCTGGTAGCAGCCCAGCCAATGAGGAGGAAATGCAGTGG
AGCTTTGGGTGCTCGTTGTGGCTTCATTGGTTCGCCCACAAATTTGATAA
TGGTGACAACAACAACCCTGATGCTATTTGCTGGGAGATTTGGGCTGGCT
CCATCAGCAAACAGGAAAGCAACGGCAGGATTGAAGCTTGAAGTGAGGGA
CTCTGGCTTGCAAACTGGTGACCCAGCTGGGTTCACTTTGGCTGACACAT
TGGCTTGTGGCAGTGTTGGTCACATCATTGGTGTTGGGGTGGTCCTTGGC
CTTAAGAACTTGGGTGCTCTGTAAAAATTTTCGAAGCAGTTTGTTATGTT
AAATCGATTGTTAATACTCGCTGTGCCATTTCTGTTGCACCTATCTGCCT
GGTTTTAATTTTTGATGGCTTCATTTGGATGTTAAAAATAATTTATTTAT
TATTCTCTAGAATAAATGATAAGTGATATTAGTGATTATATTGGATAGAG
AAAGAGAATGGATGAGGAAAAATTCCATCGACGCCCCAAGTCAAAAATAT
TGAATCAATCCACATACTGGGGTTTTGAGAAAAAAAAACGTAAAAAAAAA
AACCTCG
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