BQ623270

Overview
NameBQ623270
Unique NameBQ623270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:834..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.432e-91
Identity = 139/156 (89.10%), Postives = 150/156 (96.15%), Query Frame = 1
Query:   85 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AF
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAF 156          

HSP 2 Score: 76.6406 bits (187), Expect = 3.432e-91
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAK
Sbjct:  156 FRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAK 194          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.935e-91
Identity = 138/166 (83.13%), Postives = 151/166 (90.96%), Query Frame = 1
Query:   55 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AF
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAF 166          

HSP 2 Score: 78.1814 bits (191), Expect = 9.935e-91
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK
Sbjct:  166 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 204          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.332e-90
Identity = 136/166 (81.93%), Postives = 150/166 (90.36%), Query Frame = 1
Query:   55 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AF
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAF 166          

HSP 2 Score: 78.1814 bits (191), Expect = 8.332e-90
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK
Sbjct:  166 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 204          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 240.736 bits (613), Expect = 1.196e-79
Identity = 119/164 (72.56%), Postives = 141/164 (85.98%), Query Frame = 1
Query:   61 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          

HSP 2 Score: 77.411 bits (189), Expect = 1.196e-79
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  163 FRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAK 201          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 1.196e-79
Identity = 119/164 (72.56%), Postives = 141/164 (85.98%), Query Frame = 1
Query:   61 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          

HSP 2 Score: 77.411 bits (189), Expect = 1.196e-79
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  163 FRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAK 201          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 7.680e-79
Identity = 115/149 (77.18%), Postives = 135/149 (90.60%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          

HSP 2 Score: 75.485 bits (184), Expect = 7.680e-79
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIK IAECLADELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  163 FRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAK 201          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.094e-77
Identity = 117/164 (71.34%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   61 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          

HSP 2 Score: 75.485 bits (184), Expect = 1.094e-77
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINA KGSSNSYAIKKKDE+ERVAK
Sbjct:  163 FRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAK 201          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 1.427e-77
Identity = 113/148 (76.35%), Postives = 133/148 (89.86%), Query Frame = 1
Query:  109 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++F
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASF 172          

HSP 2 Score: 73.9442 bits (180), Expect = 1.427e-77
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRN+K+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  172 FRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAK 210          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 4.506e-76
Identity = 116/166 (69.88%), Postives = 138/166 (83.13%), Query Frame = 1
Query:   55 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 187          

HSP 2 Score: 77.411 bits (189), Expect = 4.506e-76
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK
Sbjct:  187 FRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAK 225          
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.093e-74
Identity = 107/149 (71.81%), Postives = 131/149 (87.92%), Query Frame = 1
Query:  106 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 552
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++F
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASF 169          

HSP 2 Score: 74.7146 bits (182), Expect = 1.093e-74
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  551 FRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAK 667
            FRNIK+IAECLADELINAA+GSSNSYAIKKKDE+ERVAK
Sbjct:  169 FRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAK 207          
The following BLAST results are available for this feature:
BLAST of BQ623270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR3.432e-9189.1040S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH9.935e-9183.1340S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH8.332e-9081.9340S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN1.196e-7972.5640S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.196e-7972.5640S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE7.680e-7977.1840S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_RAT1.094e-7771.3440S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NEUCR1.427e-7776.3540S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5A_DROME4.506e-7669.8840S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA1.093e-7471.8140S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00361 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623270 ID=BQ623270; Name=BQ623270; organism=Citrus sinensis; type=EST; length=667bp
CTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCAGGT
AAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTC
ACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTC
AATGACATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGC
TACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGA
AGGCCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCAC
GGTCGTAACAACGGCAAGAAATTGATGGCTGTCAGGATTGTTAAGCATGC
CATGGAGATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTG
TTGATGCTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGA
TCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCG
TGTGAATCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTT
TTTCGTAACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAA
TGCTGCCAAGGGGTCATCTAACAGCTATGCGATCAAGAAGAAGGATGAGA
TTGAGAGAGTGGCAAAG
back to top