BQ623274

Overview
NameBQ623274
Unique NameBQ623274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623274_ssr414 microsatellite BQ623274_ssr414:414..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2046 contig Csv1_Contig2046:142..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.802e-32
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VVVFSKTYC YCT VK+LL QLG  +KVVELD ESDGS+IQ ALAEWTGQRTVPNVFIGGKHIGGCD+   KH  G+LVP
Sbjct:   13 NAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVP 94          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.758e-31
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VVVFSKT+C YCT VK+LL QLG  FKV+ELD ESDGS +Q ALAEWTGQRTVPNVFIGGKHIGGCD     HQ GKL+P
Sbjct:   13 NSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIP 94          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.822e-31
Identity = 62/80 (77.50%), Postives = 66/80 (82.50%), Query Frame = 2
Query:    8 VVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            VVVFSKTYC YC RVKELL+QLG  FK VELD ESDGS+IQ+ LAEWTGQRTVPNVFIGG HIGGCD     H+ GKLVP
Sbjct:   15 VVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVP 94          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.852e-29
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    5 PVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            PVVVFSKTYCGYC RVK+LL QLG +FKV+ELD  SDG +IQ+AL+EWTGQ TVPNVFI G HIGGCD V+E ++ GKLVP
Sbjct:   30 PVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVP 110          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.419e-29
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            NPV VFSKTYC +C  VK+LL +LG +FK VELD E DGS+IQAALAEWTGQRTVPNVFIG KHIGGCD     H+ GKL+P
Sbjct:   13 NPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLP 94          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.039e-29
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            +PVVVFSKTYC +C RVK LL +L  S+K VELD+ESDGS++Q+ALA+WTGQRTVP VFI GKHIGGCD  +  H+GG LVP
Sbjct:   39 SPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVP 120          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    5 PVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            PVVV+SK+YC +C RVK+L +QLG +FK +ELD ESDGS++Q+ALAEWTGQRTVPNVFI GKHIGGCD  +  +  GKLVP
Sbjct:   14 PVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVP 94          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            NPVVV+SKT+C Y ++VK L K L     VVELD + S+GS++Q  L + TGQ TVPNVFIGGKHIGGC   ++ H  G+L
Sbjct:   85 NPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGEL 165          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    8 VVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            +++FSKT C YC  VK+L K+L     VVELD+ESDGS++Q+A  + +G RTVP VFI  K IGGCD   + H  GKL+P
Sbjct:   13 LIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIP 92          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            N V++FSK+YC + TRVKEL   LG  + ++ELD   DG+ +Q  L E + Q+TVPN+F+   H+GGCD   + HQ G L
Sbjct:  120 NRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLL 199          
The following BLAST results are available for this feature:
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GLRX_RICCO6.802e-3278.05Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GLRX_VERFO5.758e-3175.61Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC2_ARATH9.822e-3177.50Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC1_ARATH1.852e-2974.07Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_SOLLC2.419e-2971.95Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC4_ORYSJ7.039e-2969.51Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC6_ORYSJ3.493e-2869.14Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRS12_ARATH1.921e-1856.79Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX_DICDI3.277e-1853.75Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
TRXR3_MOUSE1.627e-1747.50Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00365 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00365 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623274 ID=BQ623274; Name=BQ623274; organism=Citrus sinensis; type=EST; length=489bp
CAATCCCGTCGTCGTCTTCAGCAAAACCTACTGTGGTTATTGTACAAGGG
TGAAGGAGTTGCTTAAACAGCTTGGAACGAGTTTCAAAGTCGTAGAATTG
GATATTGAAAGTGATGGAAGTAAAATTCAAGCAGCTCTGGCAGAGTGGAC
TGGGCAGAGAACCGTACCCAATGTGTTCATTGGGGGAAAACACATCGGTG
GCTGCGACACTGTAGTAGAGAAGCACCAAGGAGGAAAGCTGGTCCCCCTT
CTTCGTGATGCCGGTGCCCTCGCCCTTGCTGACAAATGATAATTTTGCTC
CGTTAAGATCAGAACCACAAGTTCGTGTACATGGGCTGAAGTGAAGAAAT
GCAACAATATTAAAGTGACCAATTATATGGTGTGTAAAAGTAACAATCGA
TGTCCACTTTATTTGTGTGTGTGTGTGGGGGGTTTATAGACATTTCTCTG
CTTGATTGGAAGGAAAATGAGAGATATGCATGCGTTGCT
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