BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:240..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.901e-51
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 324
            KA+ADA+PSWDNVV+AYEPVWAIGTGKVA+P+QAQEVH A+RDWLK NVS +VA+KTRIIYGGSVNG NCAELAKQEDIDGFLVGGASLKGPEFATIVNSVT+KKVAA
Sbjct:  215 KAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKKVAA 322          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.945e-49
Identity = 91/108 (84.26%), Postives = 104/108 (96.30%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 324
            KA+ADA+PSW+N+V+AYEPVWAIGTGKVA+P+QAQEVH A+R+WLK NVSA+VA+KTRIIYGGSVNG N AELAK+EDIDGFLVGGASLKGPEFATIVN+VTSKKVAA
Sbjct:  207 KAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKKVAA 314          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.459e-49
Identity = 92/108 (85.19%), Postives = 102/108 (94.44%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 324
            KA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+QAQEVH A+R WLK NVS +VA+KTRIIYGGSVNG N AELAK+EDIDGFLVGGASLKGPEFATIVNSVTSKKVAA
Sbjct:  208 KAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 315          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.895e-47
Identity = 91/108 (84.26%), Postives = 98/108 (90.74%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 324
            KA+AD I  W NVVIAYEPVWAIGTGKVA+PEQAQEVHAA+RDWLK NVSADVA+  RIIYGGSVN +NCAELAK+EDIDGFLVGGASLKGP+FATI NSVTSKKV A
Sbjct:  191 KAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKKVTA 298          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 324
            WDNVV+AYEPVWAIGTGKVA+PEQAQEVH A+RDWLK NVS +VA+KTRIIYGGSVNG N   LA QED+DGFLVGGASLKGPEFATI+NSVT+KKVAA
Sbjct:  159 WDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKKVAA 257          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 5.671e-37
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 312
            KA AD I  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LRDWLK NVS +VA  TRIIYGGSV G++C ELA Q D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:  149 KAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 75/104 (72.12%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 312
            KA A+ I  W NVV+AYEPVWAIGTGKVATP QAQEVHA+LRDWLK N S +VA  TRIIYGGSV  +NC ELA Q D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:  149 KAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.650e-36
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            KA AD I SWDNVV+AYEPVWAIGTGKVA+P QAQEVHA LR W  +NVSA+V+  TRIIYGGSV+GSNC EL  Q D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:   90 KAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLK-PEFIDIIKAAEVKKSA 195          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.676e-36
Identity = 76/107 (71.03%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            KA AD + +W NVVIAYEPVWAIGTGKVA+P QAQEVH  LR WL  NVSADVA  TRIIYGGSVNG NC EL  Q D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:  149 KAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLK-PEFIDIIKAAEVKKSA 254          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 8.189e-36
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 312
            KA ++ I  W NVV+AYEPVWAIGTGKVATP+QAQEVH  LR WL  NVSA+VA  TRIIYGGSV G+NC ELA + D+DGFLVGGASLK PEF  I+NS T K
Sbjct:  149 KAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK-PEFIDIINSATVK 251          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SPIOL6.901e-5187.96Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_FRAAN4.945e-4984.26Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_ARATH6.459e-4985.19Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_SECCE7.895e-4784.26Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP2.377e-4383.84Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_SECCE5.671e-3773.08Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE7.407e-3772.12Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_LACSA1.650e-3671.03Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ARATH3.676e-3671.03Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_ORYSJ8.189e-3671.15Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
back to top