BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.127e-61
Identity = 119/141 (84.40%), Postives = 126/141 (89.36%), Query Frame = 3
Query:   63 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDSTRR
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRR 141          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.629e-61
Identity = 123/141 (87.23%), Postives = 126/141 (89.36%), Query Frame = 3
Query:   63 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            MSRRKTREPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDSTRR
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRR 140          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.189e-61
Identity = 121/139 (87.05%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   69 RRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            R+KTREPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDSTRR
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRR 141          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.801e-60
Identity = 118/141 (83.69%), Postives = 125/141 (88.65%), Query Frame = 3
Query:   63 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            MS+RKT+EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDSTRR
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRR 141          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.843e-60
Identity = 120/141 (85.11%), Postives = 123/141 (87.23%), Query Frame = 3
Query:   63 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DSTRR
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDSTRR 141          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.938e-60
Identity = 117/141 (82.98%), Postives = 125/141 (88.65%), Query Frame = 3
Query:   63 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            MS+RKT+EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDSTRR
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRR 141          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.075e-55
Identity = 109/137 (79.56%), Postives = 118/137 (86.13%), Query Frame = 3
Query:   75 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+Q+CKELGITALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIPTDSTRR
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRR 144          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.477e-54
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = 3
Query:   63 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.477e-54
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = 3
Query:   63 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.477e-54
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = 3
Query:   63 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRR 142          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS143_ARATH2.127e-6184.4040S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS141_MAIZE3.629e-6187.2340S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_MAIZE6.189e-6187.0540S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_ARATH1.801e-6083.6940S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS14_LUPLU6.843e-6085.1140S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS141_ARATH8.938e-6082.9840S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_CHLRE5.075e-5579.5640S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_MOUSE1.477e-5477.4640S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN1.477e-5477.4640S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR1.477e-5477.4640S ribosomal protein S14 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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