BQ623294

Overview
NameBQ623294
Unique NameBQ623294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7921 contig Csv1_Contig7921:570..1215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623294 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.955e-56
Identity = 121/199 (60.80%), Postives = 136/199 (68.34%), Query Frame = 2 
Query:    2 SIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFP---PGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVXXXXXXXXXXXXXXXQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKES--SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTIFVCQK 583
            SII+QLISTAGSLLPS+KH +S A       GQ G   FP       ++   Q  N+C  +  +   P+ LV     ++ H V                LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKT AALAKP+KES   SEPMLIKRYSCP+ GCKRNK+HKKFQPLKTI +C K
Sbjct:  130 SIIIQLISTAGSLLPSVKHNMSTAPGPF--TGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPV-LVDE---REGHVVEEHEMKDEDDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTI-LCVK 321
The following BLAST results are available for this feature:
BLAST of BQ623294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH1.955e-5660.80Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00385 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00385 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623294 ID=BQ623294; Name=BQ623294; organism=Citrus sinensis; type=EST; length=647bp
TTCAATTATTGTTCAGTTAATCTCCACAGCTGGTAGTCTTCTCCCATCCA
TGAAGCATACCCTCTCTGCAGCTACTCCTTCCATGGGACAGCTTGGGCAA
TTTGGCGGGGTTCCTTTTCCTCCAGGGGCTGGCTTAAGTGATAGCATTCA
GGTGCAAAATAGTTGTGCAAAAAAAGTGTCTAATCAGTCAAACCCAATTG
ATCTAGTCGGTAATAGTGGGACTCAACAAAACCATGCTGTTGAAGAACAT
GATTTAAAAGACGAAGATGATGCTGATGATGGAGAGCAACTTCCACCAGG
TTCCTATGAGATCTTACAACTAGAAAAAGAAGAGATCCTTGCACCGCACA
CCCACTTCTGCACAATATGTGGCAAAGGATTCAAGAGGGATGCAAATTTG
CGGATGCACATGAGAGGGCATGGGGATGAGTATAAAACCCCAGCAGCGCT
AGCAAAACCTCACAAGGAATCTAGCTCCGAACCAATGCTTATTAAAAGGT
ATTCCTGCCCTTATGCTGGTTGCAAGCGGAACAAGGATCACAAAAAGTTT
CAGCCTTTGAAGACTATTTTTGTGTGTCAAAAACCATTACAAGAGGACCT
CATTGTGACATAAGCTATGTTTGTAGCAGATGCAACACCAAAAAATT
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