BQ623311

Overview
NameBQ623311
Unique NameBQ623311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5524 contig Csv1_Contig5524:68..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623311 vs. ExPASy Swiss-Prot
Match: WDR85_HUMAN (WD repeat-containing protein 85 OS=Homo sapiens GN=WDR85 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 73/168 (43.45%), Postives = 102/168 (60.71%), Query Frame = 2
Query:    2 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIANIPGDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV-----GGEKAEVLETYAKHGSLAYGADW 490
            +V+    +L+ +  W+AH+FE W  +F+   P +VY+G DD    GWD R  P K  F  SK H MGVC I + P   + L TGSYDE++ +WD R++ +P+ +T V   GGVWRIK HPF   L+LAACMH+GF ++         ++A VL ++    SL YGADW
Sbjct:  177 MVNETRPRLQKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRV-PGKFLF-TSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPLADTPV--QGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADW 340          
BLAST of BQ623311 vs. ExPASy Swiss-Prot
Match: WDR85_DICDI (WD repeat-containing protein 85 homolog OS=Dictyostelium discoideum GN=wdr85 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 73/199 (36.68%), Postives = 103/199 (51.76%), Query Frame = 2
Query:   38 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE----------SPFKLAFQNSKIHKMGVCCIANIPGDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-------AKHGSLAYGADWQRGRLSLEGKRKNSVVATCSFYDKLLRIWMP 583
            ++WKAH++E W  +F+ H   +V++G DDCKF  WD+ +           P    F  +K   MGV  I   P   N +  GSYDE LR+WD++S+ +P+  T   LGGG+WRIK HPF    ++ ACM  GF ++    E      T          H S+AYG DW   + + +       +  CSFYDK L IW+P
Sbjct:  176 KRWKAHDYEAWICAFNYHDESIVFSGGDDCKFKIWDLNQLLNHNDDDIGIPPTPKF--TKRCDMGVTSIHCHPTIENLIAVGSYDECLRIWDLKSLKQPIITTD-SLGGGIWRIKWHPFQKNKLVTACMGGGFHILSTDPENINDFSTLQIEQSYNGPHKSIAYGVDWSFNKNNFD----KQFIGCCSFYDKCLSIWIP 367          
BLAST of BQ623311 vs. ExPASy Swiss-Prot
Match: WDR85_MOUSE (WD repeat-containing protein 85 OS=Mus musculus GN=Wdr85 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 71/162 (43.83%), Postives = 96/162 (59.26%), Query Frame = 2
Query:   20 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIANIPGDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV---KVGGEKAE--VLETYAKHGSLAYGADW 490
            ++L+++  W AH FE W  +F+  Q  +VY+G DDC   GWD R          SK H MGVC I + P   + L TGSYDE++ +WD R+I +P+ +  V   GGVWR+K HP    L+LAACMHNGF ++   K   EK +  VL ++    SL YGADW
Sbjct:  182 AELQLVASWPAHHFEAWIAAFNYWQTELVYSGGDDCLLRGWDTR--MLGTPVFTSKRHCMGVCSIQSSPHQEHILATGSYDEHVLLWDTRNIRQPLADVPV--QGGVWRLKWHPVHHHLLLAACMHNGFKILNCQKAIEEKQDITVLTSHEMPNSLVYGADW 339          
BLAST of BQ623311 vs. ExPASy Swiss-Prot
Match: YB96_YEAST (Uncharacterized protein YBR246W OS=Saccharomyces cerevisiae GN=YBR246W PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 69/206 (33.50%), Postives = 96/206 (46.60%), Query Frame = 2
Query:   47 KAHEFELWATSFDVHQPH--MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV----CCIANIPGDSNT-LLTGSYDEYLRVWDVRSISKP---------VNETSVCLGGGVWRIKHHPFIP--------GLVLAACMHNGFAVVKVGGEKAEV--LETYAK--HGSLAYGADWQRGRLSLEGKRKNSVVATCSFYDKLLRIWM 580
            K HE E W   F   QP   +V+TG DD +    D+R   F   + N++IH  GV    C   N   +  T ++TGSYD+ +R  D+R + +          VN+ +  LGGGVWR    P             +L  CM+NG  VV +     E   ++ Y K  H S+ YG DW            NS++ATCSFYD  L+ W+
Sbjct:  194 KPHELECWTAEFGSLQPFQDVVFTGGDDSRIMAHDLRSKEF--IWSNNRIHDAGVVSIKCSQPNFRNNKPTSIITGSYDDNIRSLDLRMMGESIFPGANVPTVNKLACDLGGGVWRFVESPIDQEQSHHNGSDRLLVCCMYNGAKVVTMNDNSDEYFQIQHYLKKGHDSMCYGGDWS-----------NSLIATCSFYDNSLQTWI 386          
BLAST of BQ623311 vs. ExPASy Swiss-Prot
Match: YQ9F_SCHPO (Uncharacterized WD repeat-containing protein C18.15 OS=Schizosaccharomyces pombe GN=SPCC18.15 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 54/187 (28.88%), Postives = 93/187 (49.73%), Query Frame = 2
Query:   32 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIANIPGDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL--VLAACMHNGFAVVKVGGEKAEV---LETYAKHGSLAYGADWQRGRLSLEGKRKNSVVATCSFYDKLLRIW 577
            +  +WK H++E W   +     +++Y+G DD     +D R  P    +++ ++H  GV  I +       + TG Y +++   D R+I KP+   S  LGGGVWR++H         VL   MH G  V+++  + + +      + +H S+ YG DW         +  + ++ATCSFYDK + +W
Sbjct:  133 IKNKWKEHDYEAWTCHYSRQDNNLLYSGGDDAALVCYDQR-IPNSCIWRDIQVHHSGVVSILSRAPFGPYIATGEYGDFMHTLDTRNIGKPL--FSANLGGGVWRLEHMETTENYHKVLGILMHRGAQVLRISNDFSSIDASKRIFKEHESMCYGGDW---------RHTDGLLATCSFYDKRVCLW 307          
The following BLAST results are available for this feature:
BLAST of BQ623311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WDR85_HUMAN9.826e-3343.45WD repeat-containing protein 85 OS=Homo sapiens GN... [more]
WDR85_DICDI1.086e-3136.68WD repeat-containing protein 85 homolog OS=Dictyos... [more]
WDR85_MOUSE2.420e-3143.83WD repeat-containing protein 85 OS=Mus musculus GN... [more]
YB96_YEAST1.127e-2033.50Uncharacterized protein YBR246W OS=Saccharomyces c... [more]
YQ9F_SCHPO2.510e-2028.88Uncharacterized WD repeat-containing protein C18.1... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00402 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00402 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623311 ID=BQ623311; Name=BQ623311; organism=Citrus sinensis; type=EST; length=687bp
GATTGTTTCCGTTGTTGAGTCACAACTTGAAGTTTTACAACAATGGAAAG
CTCATGAGTTCGAGCTTTGGGCAACTTCATTCGACGTCCACCAACCACAT
ATGGTGTACACTGGCTCAGATGATTGTAAGTTCAGTGGCTGGGATATACG
GGAGAGTCCATTCAAGTTGGCATTTCAGAACTCCAAGATCCATAAGATGG
GTGTTTGTTGCATTGCAAATATCCCCGGTGATTCTAATACGTTACTTACT
GGTAGCTACGACGAATACCTGAGGGTATGGGATGTAAGGTCAATCTCAAA
ACCGGTAAATGAAACTTCAGTTTGTTTAGGGGGAGGAGTCTGGAGAATCA
AGCACCACCCTTTTATACCAGGCTTGGTCTTGGCGGCATGTATGCACAAT
GGATTTGCAGTTGTCAAGGTTGGAGGGGAGAAAGCTGAAGTGCTTGAAAC
TTATGCTAAGCACGGCTCTCTCGCATATGGAGCAGATTGGCAGAGAGGGA
GATTGTCCCTGGAAGGCAAACGAAAGAATAGTGTAGTGGCTACTTGCTCG
TTTTATGATAAACTTCTCCGCATATGGATGCCAGAAAGTGATTGCCTACA
AGATGAACTTCATTCACCTCATGTTTTCCATTATATAAGGGTGGAAGGAT
CCAGTCCAGTTGATTTTGGGAATCTTTCGTACTATTT
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