BQ623314

Overview
NameBQ623314
Unique NameBQ623314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623314_ssr253 microsatellite BQ623314_ssr253:253..276. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623314 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.286e-18
Identity = 54/116 (46.55%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 EFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLIC-MEMAXXXXXXXXXXXXXXXXFMDTSCFLDDNGIGSAWEPLWT 346
            +FLQELPESQR DAV+SMVYEA ARIRDPVYGCAGAI HLQ+QVS             V M+ Q+ NL+ LI  M+                  F++     + N     W+PLWT
Sbjct:   76 KFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKS--NTNSSMLWWDPLWT 189          
BLAST of BQ623314 vs. ExPASy Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-16
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 2
Query:    2 EFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLI 217
            +FLQELPESQR DAV+SMVYEA AR+RDPVYGCAGAI HLQ+QVS             V M+ Q+ +L+ LI
Sbjct:   95 KFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 166          
BLAST of BQ623314 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    2 EFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVS 136
            + LQELP  QRADAV+S+V+EA+AR+RDPVYGC GAI +LQ QVS
Sbjct:   51 KMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVS 95          
BLAST of BQ623314 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2
Query:    2 EFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 133
            + LQELP  QR DAVSSMVYEA+AR+RDPVYGC GAI  LQ+Q+
Sbjct:   56 KMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQI 99          
BLAST of BQ623314 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 2
Query:    2 EFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 133
            + L E+PESQRADA +S+VYEA+ R+RDPVYGC GAI  LQ+QV
Sbjct:   88 KMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQV 131          
The following BLAST results are available for this feature:
BLAST of BQ623314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LBD1_ARATH1.286e-1846.55LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LBD11_ARATH1.203e-1661.11LOB domain-containing protein 11 OS=Arabidopsis th... [more]
LBD12_ARATH8.924e-1271.11LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD4_ARATH1.522e-1172.73LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD15_ARATH9.867e-1168.18LOB domain-containing protein 15 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00405 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00405 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623314 ID=BQ623314; Name=BQ623314; organism=Citrus sinensis; type=EST; length=463bp
GGAGTTCTTGCAGGAACTGCCAGAATCTCAACGAGCAGATGCAGTGAGCA
GCATGGTCTATGAAGCAAGTGCCAGAATCCGGGATCCTGTTTACGGCTGC
GCCGGGGCTATTTGCCATCTCCAGAAACAAGTCAGTGAGCTTCAGGCTCA
GTTAGCCAAGGCACAGGCTGAGCTTGTCACCATGGAAAGCCAGCAACGCA
ATTTAATAACTCTAATTTGCATGGAAATGGCACAATCTCAAGAACAAGTC
TTGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCATGGATACTAGCTGTTT
TTTGGATGACAATGGTATTGGATCAGCTTGGGAGCCTCTGTGGACATGAT
CAAGAGAAATTAAAGCAAGATTGTTGAAATTTTAACCTTTTAAGAGATTA
TTTACATAAAGCTAAACATACTTAATTATAAAAGTTTCTGATCAATAATT
AAAGTTATTTGCT
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