BQ623320

Overview
NameBQ623320
Unique NameBQ623320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:278..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.959e-52
Identity = 99/122 (81.15%), Postives = 111/122 (90.98%), Query Frame = 1
Query:   10 AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 375
            + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   39 SSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.776e-45
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 1
Query:    1 NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 372
            N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   46 NISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.982e-42
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   70 KAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 375
            +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:   43 RAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.617e-22
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   82 NTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 360
            NT  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   76 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 192
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   70 KAELNTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 348
            KA L+  +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of BQ623320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH1.959e-5281.15Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.776e-4575.81Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU6.982e-4281.37Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.617e-2253.76Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA3.057e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE4.414e-1241.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00411 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00411 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623320 ID=BQ623320; Name=BQ623320; organism=Citrus sinensis; type=EST; length=482bp
AACACCAGGGCCAAAACCCCCCTCCCCAAGCTCGCCACCTCCGCCAAAAG
AAACAGCTTCGGCGGCATTAAAGCTGAGCTGAACACACCACTTGTCATCA
GCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAAC
TTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGT
CACCCACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCC
TCAAATCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTCGCTTGG
GGTTCCATTGGCCATATTGTCGCTTACTACATCTTGGCCACCTCCAGCAA
CGGCTATGATCCCAAGTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCT
CTTTTGTCTCTTTTAGTTTCTTAATTTCTCAAGTGTTGCGCTTTGTATAG
TTAATAAATTTCCTAGCATTTAATGGATGAGA
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