BQ623327

Overview
NameBQ623327
Unique NameBQ623327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11469 contig Csv1_Contig11469:59..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623327 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.579e-17
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  161 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP 412
            +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP
Sbjct:   38 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPP 120          
BLAST of BQ623327 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.298e-16
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  161 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP 412
            +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP
Sbjct:   38 YEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPP 120          
The following BLAST results are available for this feature:
BLAST of BQ623327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN2.579e-1750.00Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE8.298e-1646.43Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00418 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00418 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623327 ID=BQ623327; Name=BQ623327; organism=Citrus sinensis; type=EST; length=472bp
TGCAGGCTTGAGCATGTTAAAGTTTTCAGTTCTTCTCGGCCTACTCTCAA
ATCTGAACTTGGGTTTATGGCCTGAATCTTCAAAGGGGTTGAAAATATTT
CCACCAACATGCAACAGAATTGAGTGTCCAAGCTTTGAGACCGTTCATGT
TGGCAATGGCTTTGAAATTCGTCACTATAATTCGTCCATGTGGATGTCTA
CTTCCCCTATTCAAGATATCTCTCTAGTTCAAGCTACCAGAACTGGCTTT
CTCCAGCTATTTGATTACATTCAAGGAAAGAACGAATATGAGCAAACAAT
AGAGATGACAGCTCCAGTAATCACTGAAGTTTTACCAAGTGATGGACCCT
TCTGTGAATCTTCATTCACCGTTAGCTTTTACGTCCCAAAGGTGAACCAA
GCCAACCCACCTCCAGCAAAAGGGCTCCATCTCCAACAATGGAAACCAAC
GTACGCCGCTGGGAGACAGTCC
back to top