BQ623328

Overview
NameBQ623328
Unique NameBQ623328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig17 contig Csv1_Contig17:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MAIZE (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 77/119 (64.71%), Postives = 100/119 (84.03%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP 409
            L LVL TTP  P DRMK I +ASEGFVYLVS  GVTG RA+++  V++L++E+K+ + KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ LGEA SP++GL+ LE++A+ +K+ALP
Sbjct:  229 LELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALP 347          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.589e-29
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 2
Query:   44 KIRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSALP*EQ 418
            ++ +++ L   PT+P +R++AI   S+GF+YLVS  GVTG R+ ++  V+ LL  ++ ++ KP+ VGFGISKPEH  QV  WGAD VIVGSAMVK L E  +PEEGLK +  F + LK AL  +Q
Sbjct:  144 EVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTGVTGMRSQVTSRVKELLTSLRSATDKPIGVGFGISKPEHALQVKNWGADAVIVGSAMVKRLAEG-TPEEGLKAIGAFCQDLKQALKEDQ 267          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP4 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 2
Query:   47 IRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + + L L   PTTP  R+ AI E S+GF+YLVS+ GVTG R+ + G V  LL E+++ + KP+ VGFGIS+PEH +QV  WGAD  IVGSA VK L E  +PE+GL  +  F +SLK+AL
Sbjct:  145 VGIELTLLVAPTTPRSRIAAIAERSQGFIYLVSTTGVTGMRSKVEGRVHELLLELQQVTDKPIGVGFGISQPEHARQVMEWGADAAIVGSAFVKRLAEG-TPEQGLAAIADFCRSLKTAL 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   47 IRLSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            I + L L   PT+P +R+KAI   S+GF+YLVS  GVTG RA +   V+ LL +++E + KP+ VGFGIS+PE   QV  WG+D VIVGSA+VK L E  SP+EGLK + +F ++LK+A+
Sbjct:  146 IGIELTLLVAPTSPKERIKAIAHQSQGFIYLVSVTGVTGMRAQMQTRVEDLLAQMREVTDKPIGVGFGISQPEQALQVKKWGSDAVIVGSAVVKRLAEG-SPDEGLKAIGEFCQNLKAAI 264          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.676e-28
Identity = 60/118 (50.85%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+L   PT+PT+R++AI +AS+GF+YLVS  GVTGAR S++  V  LL ++++ + KP+ VGFG+S P   +Q+  WGADGVIVGSA+VK L    +P EGL  +++F +SLK A+
Sbjct:  147 LDLILLVAPTSPTERIEAIAKASQGFIYLVSVTGVTGARTSVASRVGELLPKLRQVTDKPIGVGFGVSDPAQARQLKEWGADGVIVGSAVVKRLATG-TPAEGLAAVKEFCESLKEAI 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803) GN=trpA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.942e-27
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L+L   PT+  +R  AI + S+GFVYLVS  GVTG R  +   V+ LL  +++ + KP+ VGFGIS+PE  +QV  WGAD VIVGSAMVK L E  +P EGL+ LE F + LK+A+
Sbjct:  147 LELILLVAPTSSPERQTAIAKKSQGFVYLVSVTGVTGVRTEVGSRVEALLAGMRQVTDKPIGVGFGISQPEQAEQVKAWGADAVIVGSAMVKRLAEG-TPTEGLQALETFCRELKTAI 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_CYAA5 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain ATCC 51142) GN=trpA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.942e-27
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + + L   PT+P +R+KAI   S+GF+YLVS  GVTG R  ++  V+ LL+ ++ ++ KP+ VGFGIS+PEH  QV  WG+D VIVGSA VK L +  +PEEGLK + +F + LK A+
Sbjct:  147 IEVTLLVAPTSPIERIKAIAHQSQGFIYLVSVTGVTGMRTQVATRVEDLLKSLRNTTDKPIGVGFGISEPEHALQVKNWGSDAVIVGSACVKRLAQG-TPEEGLKAVGEFCQRLKQAI 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_THEEB (Tryptophan synthase alpha chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.313e-27
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            L L L   PTT  +RM+AI  AS+GF+YLVS+ GVTG R  ++  VQ LL  +++ + KP+ VGFGI+ PEH +QV  WGAD  IVGSA VK L E   P++GL  + +F +SL++AL
Sbjct:  149 LELTLLIAPTTSPERMRAIATASQGFIYLVSTTGVTGMRQEMASRVQELLHTLRQITPKPIGVGFGIASPEHARQVRDWGADAAIVGSAFVKRLAE---PDQGLAAVAEFCQSLRTAL 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.313e-27
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 406
            + ++L   PT+P +R++AI   S+GF+YLVS  GVTG R  ++  V+ LL  I+  + KPV VGFGIS+P    QV  WGAD VIVGSAMVK L +  SP +GLK LE+F +SLK A+
Sbjct:  147 IEVILLVAPTSPPERIQAIALQSQGFIYLVSVTGVTGMRKQVATRVEELLDSIRSVTDKPVGVGFGISEPTQALQVKNWGADAVIVGSAMVKRLAD-NSPSDGLKSLEEFCRSLKQAI 263          
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Match: TRPA_PROMT (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.381e-27
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   53 LSLVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESSTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 403
            + LVL   PTTP DRMK I   S GF YLVS  GVTG R+S+  +V +L++++K+SS+ P+AVGFGIS  +H++QV  WGADG IVGSA+VK +  A S E  ++E   F K L++A
Sbjct:  149 IDLVLLVAPTTPKDRMKRIAATSNGFTYLVSVTGVTGERSSLEDNVGSLVQQLKDSSSSPIAVGFGISDVKHIEQVREWGADGAIVGSALVKRIANA-SIEMKVEEAGSFCKELRAA 264          
The following BLAST results are available for this feature:
BLAST of BQ623328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TRPA_MAIZE2.212e-3964.71Indole-3-glycerol phosphate lyase, chloroplastic O... [more]
TRPA_CYAP81.589e-2950.40Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_CYAP42.075e-2952.50Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_TRIEI5.112e-2851.67Tryptophan synthase alpha chain OS=Trichodesmium e... [more]
TRPA_SYNP26.676e-2850.85Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNY31.942e-2751.69Tryptophan synthase alpha chain OS=Synechocystis s... [more]
TRPA_CYAA51.942e-2749.15Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_THEEB3.313e-2750.85Tryptophan synthase alpha chain OS=Thermosynechoco... [more]
TRPA_MICAN3.313e-2751.69Tryptophan synthase alpha chain OS=Microcystis aer... [more]
TRPA_PROMT7.381e-2752.14Tryptophan synthase alpha chain OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00419 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00419 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623328 ID=BQ623328; Name=BQ623328; organism=Citrus sinensis; type=EST; length=575bp
GTCCCTCTGGAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAA
GATTGAGCCTGGTACTTTTTACAACTCCCACCACTCCAACAGATCGAATG
AAAGCCATTGTTGAAGCATCAGAGGGATTTGTCTATCTTGTAAGCTCAAT
TGGAGTTACTGGAGCTCGCGCTTCTATTAGTGGCCATGTTCAAACTCTTT
TAAGGGAAATTAAAGAGTCATCAACTAAGCCCGTTGCAGTTGGCTTTGGC
ATATCAAAACCTGAGCATGTGCAACAAGTAGCAGGATGGGGAGCTGATGG
TGTGATTGTTGGGAGTGCTATGGTGAAGCTATTGGGTGAAGCACAATCTC
CTGAGGAGGGACTGAAGGAGCTAGAAAAATTCGCAAAATCGTTAAAATCT
GCTCTCCCGTGAGAACAGTAATGTAGATCAGCAATAATGTTTGATCAAGT
GTACTTCTAAAAACGATTTTCTATTTAGAGAATCAAATTTTAAAAAGAAC
TGTATTTCCTGATGCTAAAGTTGAATATGTAGTATAAATTAGAGAATCTA
TTCTCCAAATCCTGATTTGGAGATT
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