BQ623354

Overview
NameBQ623354
Unique NameBQ623354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11523 contig Csv1_Contig11523:373..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623354 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.813e-31
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 3 
Query:    3 QLKTTLNVFLAGNTKQEVCDFKVKGSWTERSCVVYAGESNTIVAQMHKKETVGSYFLNKDRFAVTVYPNIDYAFIVALIVILDDINGDNTA 275
            QLKT L+VFL  N  ++ CDF+VKGSW ERSCVVYAGES+ IVAQMH+K TV S FL KD F+VTVYPN+DYAFI +L+VILDD+N ++ A
Sbjct:  126 QLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216
The following BLAST results are available for this feature:
BLAST of BQ623354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH6.813e-3168.13UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00445 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00445 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623354 ID=BQ623354; Name=BQ623354; organism=Citrus sinensis; type=EST; length=428bp
TCCAATTGAAGACCACTTTGAATGTTTTTTTGGCAGGTAATACCAAACAA
GAGGTTTGTGATTTTAAGGTCAAAGGCAGCTGGACAGAACGATCCTGTGT
TGTTTATGCAGGAGAGTCCAACACAATTGTTGCCCAGATGCACAAAAAGG
AAACCGTTGGAAGCTACTTCCTTAACAAGGATAGATTCGCCGTGACAGTT
TATCCCAACATCGACTATGCATTTATAGTTGCCCTGATTGTGATCCTTGA
TGACATCAACGGTGACAACACTGCATGAGATTACTCATATTTCAGATTTC
GGAATTGCTTCTATAAATCACGTAAATAAGTGTGTGGTTTATGTATTTTA
AGAATGTTCTTGTTTGCCAGTTGCTACATTAATTTCCCTTGTGTCCTAAG
TTGTGCAATATAACTTGTCAAAGTATTT
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