BQ623365

Overview
NameBQ623365
Unique NameBQ623365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.974e-29
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGD 313
            GG+NPPH+HPR TEAG+V  G++ VG +TTNNT FSKVL  G++F++PR LVHFQ NVG   A  I  FN+Q PG +    T+F + P +PN VLTK+FR  D
Sbjct:  106 GGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDD 208          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGD 313
            GG+NPPH HPR TE G V  G++ VG ++TNNT FSKVL  G+ F+IPR LVHFQ NVG   A  I  FN+Q PG      T+F + P +PN VLT++FR  D
Sbjct:  106 GGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDD 208          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIV---TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            GG NPPH HPR TE GIV RG LLVGI+    T N ++SKV+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+     T+F + PP+P  VL K+ RV
Sbjct:  110 GGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRV 213          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIV---TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            GG NPPH HPR TE GIV RG LLVGI+    T N ++SKV+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+     T+F + PP+P  VL K+ RV
Sbjct:  108 GGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRV 211          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 57/108 (52.78%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTT---NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            GG NPPH HPR TE GIV RG LLVGI+ T    N ++SKV+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+     T+F + PP+P  VL K+ RV   V
Sbjct:  110 GGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGV 217          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVG 310
            GG+NPPHTHPR TE   V  G L VG +TT N   +K +  G+ F+ P+ LVHFQ N G EPAT I  FN+Q PG  +   T+F+ATPPVP+ VLTK+F++G
Sbjct:  101 GGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIG 202          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.563e-25
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIV---TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            GG NPPH HPR TE GIV RG LLVGI+    T N ++S+V+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+     T+F + PP+P  VL K+ RV
Sbjct:  108 GGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRV 211          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.041e-25
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVG 310
            GG+NPPHTHPR TE   V +GTL VG +TT N  ++K ++ G VF+ PR L+HFQ N G+ PA  I  FN+Q PG      T+F A+P VP+ VLTK+F+VG
Sbjct:  104 GGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVG 205          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.666e-25
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVG 310
            GG+NPPHTHPR TE   V  G L VG +TT N  F+K +  G+VF+ PR LVHFQ N G  PA+ +  FN+Q PG +    T+F A P +P +VLTK+F+VG
Sbjct:  103 GGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVG 204          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            GG NPPHTHPR TE   V  G L VG +TT N  F+K +T G+VF+ PR LVHFQ N G+ PA  I  FN+Q  G      T+F A PPVP++VL K+FRV
Sbjct:  103 GGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRV 203          
The following BLAST results are available for this feature:
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLT2_ARATH3.974e-2956.31Germin-like protein subfamily T member 2 OS=Arabid... [more]
GLT1_ARATH4.858e-2754.37Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL36_ORYSJ5.371e-2653.85Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ5.371e-2653.85Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ5.371e-2652.78Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
RHRE_PEA7.015e-2653.92Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL33_ORYSJ1.563e-2552.88Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL52_ORYSJ2.041e-2552.94Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL22_ARATH2.666e-2551.96Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL11_ORYSJ5.938e-2554.46Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00456 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00456 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623365 ID=BQ623365; Name=BQ623365; organism=Citrus sinensis; type=EST; length=483bp
TGTCGGCGGAATAAACCCGCCTCATACGCATCCTCGTGGAACTGAGGCTG
GTATTGTTACCAGAGGAACGTTGCTCGTAGGTATAGTAACAACTAATAAT
ACCTTTTTCTCAAAGGTCTTGACTCCCGGGAAGGTGTTCTTAATTCCTAG
AGCACTGGTTCACTTCCAACTAAATGTTGGAAACGAGCCGGCCACCTTTA
TACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGATTCAATCGGTACT
ATATTTGACGCAACGCCTCCCGTTCCCAATGAAGTGTTGACCAAATCTTT
CCGAGTGGGTGATGATGTGATCAATGCCATCAGAGCAGCCCGAGCCCAAT
CAAGCTAGATTAACATCCTCGATGTTCGATCGATATCCTTTATGTCTCAC
AACTAATGGATGAGATCTGTTGTGTGTACTAATTATTAAATAAAGAATAA
AGCTGAGACAACCAATAATTATAGAATAAAGAA
back to top