BQ623386

Overview
NameBQ623386
Unique NameBQ623386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623386 vs. ExPASy Swiss-Prot
Match: YAMB_SCHPO (Uncharacterized PI3/PI4-kinase family protein C1F5.11c OS=Schizosaccharomyces pombe GN=SPAC1F5.11c PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   22 WAFKKQFAIQLALSSFMSFMLQIGGRSPNKILFAKNTGKIFQTDFHPAYDANGMIEFN-EPVPFRLTRNMQSFFSHFGVEGLIXXXXXXXXXXXXXPKQSEHLWYHLGMFFRDELLSWSWRRPLGMPLGAAGGSGLNPIDFKDKVSTNVENVIGRINGIAPQFSEE 516
            W F++ F  Q A    M+++  IGGRSP K+   K++G++   D  P+  +N  +  N E VPFRLT  +Q   S  GVEGL+             P  +  +  +L ++ RDE+  WS ++   +P G         I   + V  NVE +  RI+ I+    E+
Sbjct: 3470 WFFRRTFTTQYAYMIIMTYVFNIGGRSPQKLFIVKDSGQVMSQDLLPSMTSNQPVFHNTEAVPFRLTPPIQYLISDLGVEGLLSGLVMSIAQSLSSP--TTDIKQYLSLYVRDEVFWWSKQQRKPIPQG---------IQLFETVKVNVELLFRRISVISHNVPED 3624          
BLAST of BQ623386 vs. ExPASy Swiss-Prot
Match: TRA1_SCHPO (Transcription-associated protein 1 OS=Schizosaccharomyces pombe GN=tra1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 1
Query:    7 NGNHMWAFKKQFAIQLALSSFMSFMLQIGGRSPNKILFAKNTGKIFQTDFHPAYDANGMIEFN-EPVPFRLTRNMQSFFSHFGVEGLIXXXXXXXXXXXXXPKQSEHLWYHLGMFFRDELLSWSWRRPLGMPLGAAGGSGLNPIDFKDKVSTNVENVIGRINGIA 498
            N + +W F+K F+ Q A  SF++++L I  R P K++F++++G ++ T+  P+  ++  +  N E VPFR T N++ F      EGL+             P     L  +LG+F RD+L  W  ++  G+P   A  S LN      KV++N + ++ R+  ++
Sbjct: 3509 NYSDLWLFRKNFSYQYACFSFITYILSINNRIPAKLVFSRDSGGVWTTEALPSMVSSTPVYHNGEIVPFRFTPNIKEFIGKTCTEGLLGPSIMAIARALSKP--DFDLDMYLGIFIRDDLFWWLAQQTKGVP---ADFSMLN------KVNSNTDLIMRRVASLS 3662          
BLAST of BQ623386 vs. ExPASy Swiss-Prot
Match: TRA1_YEAST (Transcription-associated protein 1 OS=Saccharomyces cerevisiae GN=TRA1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 51/175 (29.14%), Postives = 80/175 (45.71%), Query Frame = 1
Query:   22 WAFKKQFAIQLALSSFMSFMLQIGGRSPNKILFAKNTGKIFQTDFHPA---YDA---------------NGMIEFNEPVPFRLTRNMQSFFSHFGVEGLIXXXXXXXXXXXXXPKQSEHLWYHLGMFFRDELLSW--SWRRPLGMPLGAAGGSGLNPIDFKDKVSTNVENVIGRI 486
            W F+KQFA Q +   FMS+M+ I  R+P+KI   K +G +F  +  P+   Y+                + +   NEPVPFRLT N+QS      +EG+              P     L  +L +F RDE++SW  +  RP+           +     ++ V TNV+ +I ++
Sbjct: 3542 WLFRKQFASQYSSFVFMSYMMMINNRTPHKIHVDKTSGNVFTLEMLPSRFPYERVKPLLKNHDLSLPPDSPIFHNNEPVPFRLTPNIQSLIGDSALEGIFAVNLFTISRALIEP--DNELNTYLALFIRDEIISWFSNLHRPI-----------IENPQLREMVQTNVDLIIRKV 3703          
BLAST of BQ623386 vs. ExPASy Swiss-Prot
Match: TRRAP_HUMAN (Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 9.863e-13
Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = 1
Query:    7 NGNHMWAFKKQFAIQLALSSFMSFMLQIGGRSPNKILFAKNTGKI----FQTDFHPAYDANGMIEFNEPVPFRLTRNMQSFFSHFGVEGLIXXXXXXXXXXXXXPKQSEHLWYHLGMFFRDELLSW--SWRRPLGMPLGAAG-GSGLNPIDFKDKVSTNVENVIGRINGIAPQFSEEEENAQKESVLVEPPQSVQKGC 579
            N    W F+K F IQLAL  F  F+L +   +P  +  A++TGK+    F+ D +   DA G ++ N PVPFRLT N+  F +  GV G +             P  +  +   L    RDE+++W    +     PL AAG    ++       V   V  ++ R++ +A QF   E    K + LV    S+   C
Sbjct: 3661 NATDYWTFRKMFTIQLALIGFAEFVLHLNRLNPEMLQIAQDTGKLNVAYFRFDIN---DATGDLDANRPVPFRLTPNISEFLTTIGVSGPLTASMIAVARCFAQP--NFKVDGILKTVLRDEIIAWHKKTQEDTSSPLSAAGQPENMDSQQLVSLVQKAVTAIMTRLHNLA-QF---EGGESKVNTLVAAANSLDNLC 3849          
BLAST of BQ623386 vs. ExPASy Swiss-Prot
Match: TRRAP_MOUSE (Transformation/transcription domain-associated protein OS=Mus musculus GN=Trrap PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = 1
Query:    7 NGNHMWAFKKQFAIQLALSSFMSFMLQIGGRSPNKILFAKNTGKI----FQTDFHPAYDANGMIEFNEPVPFRLTRNMQSFFSHFGVEGLIXXXXXXXXXXXXXPKQSEHLWYHLGMFFRDELLSW--SWRRPLGMPLGAAG-GSGLNPIDFKDKVSTNVENVIGRINGIAPQFSEEEENAQKESVLVEPPQSVQKGC 579
            N    W F+K F IQLAL  F  F+L +   +P  +  A++TGK+    F+ D +   DA G ++ N PVPFRLT N+  F +  GV G +             P  +  +   L    RDE+++W    +     PL AAG    ++       V   V  ++ R++ +A QF   E    K + LV    S+   C
Sbjct: 2367 NATDYWTFRKMFTIQLALIGFAEFVLHLNRLNPEMLQIAQDTGKLNVAYFRFDIN---DATGDLDANRPVPFRLTPNISEFLTTIGVSGPLTASMIAVARCFAQP--NFKVDGVLKTVLRDEIIAWHKKTQEDTSSPLSAAGQPENMDSQQLVSLVQKAVTAIMTRLHNLA-QFDGGE---SKVNTLVAAANSLDNLC 2555          
The following BLAST results are available for this feature:
BLAST of BQ623386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YAMB_SCHPO1.054e-1430.72Uncharacterized PI3/PI4-kinase family protein C1F5... [more]
TRA1_SCHPO4.427e-1329.70Transcription-associated protein 1 OS=Schizosaccha... [more]
TRA1_YEAST7.552e-1329.14Transcription-associated protein 1 OS=Saccharomyce... [more]
TRRAP_HUMAN9.863e-1329.80Transformation/transcription domain-associated pro... [more]
TRRAP_MOUSE1.288e-1229.80Transformation/transcription domain-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00477 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00477 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623386 ID=BQ623386; Name=BQ623386; organism=Citrus sinensis; type=EST; length=636bp
CTGCTAAATGGCAACCATATGTGGGCTTTCAAAAAGCAATTTGCCATCCA
GTTAGCCCTGTCGAGTTTTATGTCTTTCATGCTACAAATAGGGGGAAGGT
CCCCAAACAAGATTTTATTTGCCAAGAACACTGGGAAGATATTCCAGACA
GATTTTCATCCTGCATATGATGCAAATGGAATGATAGAGTTTAATGAACC
AGTGCCTTTTCGTCTGACAAGGAACATGCAATCGTTCTTCTCCCATTTTG
GCGTGGAAGGCCTTATTGTGTCTGCAATGTGTGCTGCTGCTCAGGCTGTG
GTTGCACCAAAACAAAGTGAGCATCTATGGTATCATTTAGGCATGTTTTT
TCGTGATGAGCTTTTATCATGGTCTTGGAGGAGACCACTTGGTATGCCTC
TGGGTGCTGCTGGAGGGAGTGGTTTGAACCCCATTGACTTCAAAGATAAG
GTTAGCACCAATGTTGAGAATGTTATTGGCCGGATCAATGGAATCGCCCC
ACAGTTCTCTGAAGAGGAAGAAAATGCTCAAAAAGAGAGTGTGTTGGTGG
AGCCACCACAGTCGGTACAGAAGGGGTGTCACTGAATTGGTTGAGGCTGC
CCTGTCAGCAAGGAACTTGTGCATGATGGATCCACA
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