BQ623408

Overview
NameBQ623408
Unique NameBQ623408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 89/177 (50.28%), Postives = 113/177 (63.84%), Query Frame = 1
Query:    7 LNDFDYPNSFQNH-HSAGMDSVVPVQT-TKPEXXXXXXXXXXXLINNENCFDIDFCRSKLXXXXXXXXXXXXXX----LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSE 519
            L DF++PNSF +H ++AG DS+VPVQT T+P            L NN++CFDIDFCRSKL                  ++ GVVPDGN+ + ++ +   + +TG            G +QAS +   DREARVLRYREKRKNRKFEKTIRY SRKAYAE+RPRIKGRFAKR E +++
Sbjct:  182 LIDFEFPNSFNHHQNNAGGDSLVPVQTKTEP----------LPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTG------------GDHQASSM---DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETEND 333          
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 79/181 (43.65%), Postives = 96/181 (53.04%), Query Frame = 1
Query:   13 DFDYPN-----SFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKLXXXXXXXXXXXXXX-----LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVD 525
            D DY N          +S+G D VVPV+                   NENCF++DF                        ++VGVVPDG S++D+SY +G   +  SGADP       G  +A  L   +REARV+RYREKRKNRKFEKTIRY SRKAYAE RPRIKGRFAKR + +   D
Sbjct:  184 DLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTV----------NENCFEMDFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPAT--SGADP-------GTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESND 345          
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  223 LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLY 534
            +D+ VVP+  + SDI+    R  +T    D    +S P      QL  ++REARVLRYREK+K RKF+KTIRY SRKAYAE RPRIKGRFAKR E ++E + ++
Sbjct:  234 MDISVVPESTA-SDITVQHPR--TTKETIDQ---LSGPPTQVVQQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIF 331          
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 71/171 (41.52%), Postives = 86/171 (50.29%), Query Frame = 1
Query:   10 NDFDYPNS--FQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKLXXXXXXXXXXXXXX--LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 510
            +D DYP        +S+G D VVPVQ                L  NE+ F+ D   SK+                +DV +VP+               S G  A+ + T +      A QL   +REARVLRYREKRKNRKFEKTIRY SRKAYAE RPRIKGRFAKR ++
Sbjct:  138 SDLDYPKIEVTSEENSSGNDGVVPVQNK--------------LFLNEDYFNFDLSASKISQQGFNFINQTVSTRTIDVPLVPE---------------SGGVTAEMTNTETP-----AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274          
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  223 LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLY 534
            +D+GVVP+  + SD + +  R+        P      P    A  L   DREARVLRYREK+K RKFEKTIRY SRKAYAE RPRIKGRFAK+ + D E ++ +
Sbjct:  245 MDLGVVPESTT-SDATVSNPRS--------PKAVTDQPPYPPAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAF 339          
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 50/93 (53.76%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  223 LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 501
            ++ GVVP+    S    T   +  T  G        A      +QL  +DREARVLRYREKRK RKFEKTIRY SRKAYAE RPR+ GRFAKR
Sbjct:  260 METGVVPE----STACVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348          
The following BLAST results are available for this feature:
BLAST of BQ623408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL5_ARATH8.248e-3550.28Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL4_ARATH4.384e-2843.65Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL2_ARATH9.788e-2051.92Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL3_ARATH1.670e-1941.52Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL1_ARATH4.858e-1950.96Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH1.323e-1653.76Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00499 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00499 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623408 ID=BQ623408; Name=BQ623408; organism=Citrus sinensis; type=EST; length=695bp
ATTGATTTGAATGATTTTGATTATCCGAATTCATTTCAGAATCATCATAG
CGCTGGCATGGACAGTGTTGTGCCTGTTCAAACAACTAAACCGGAACCAA
TTCCAGCTCAAGCTGCAGCTCCAATTCCTTTGATCAACAATGAAAATTGC
TTCGATATCGATTTCTGTAGATCCAAGCTCTCTTCATTCAACTACCAAAG
CCAAAGTGTTTCATCGTCATCTCTTGATGTTGGAGTAGTTCCAGATGGGA
ACTCGATGTCCGATATTTCGTACACATTTGGCCGAAATATGAGCACTGGG
TCCGGCGCCGATCCAAGCGTCACCGTATCGGCTCCTGGTGCTAACCAGGC
AAGTCAACTTTGTGGGATCGACCGAGAAGCTAGAGTTTTGCGTTACAGGG
AGAAGAGAAAGAACCGTAAATTTGAGAAAACTATTCGTTATCATTCACGT
AAAGCTTACGCCGAAACTAGACCAAGAATCAAGGGCCGGTTCGCGAAAAG
AGCCGAGGCTGACTCCGAAGTTGACCGGCTTTACAAATCTGCAGCTTCAG
CCGCTGGTGCCTACTTGGCCGATTCTCAATACGGGCGTCGTTCCCTCGTT
TTGAGGAGTAAGAAGCGGAAATTCAGTGTCATGATTCTGTCCTTCTGGGC
GTATTTGCTAAATAATGAAACTAGAATAATCGTACGGGTGGGGGT
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