BQ623410

Overview
NameBQ623410
Unique NameBQ623410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6429 contig Csv1_Contig6429:516..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.620e-14
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG ITNIL+ENVVQPLLVSTSA+TLA E V M+LKIDDI T R
Sbjct:  486 GINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIATAR 533          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  495 GINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVNTR 542          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 137
            GINVRKG IT+IL ENVVQPLLVSTS+ITLA+E VR ILKIDDI+
Sbjct:  485 GINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  492 GINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  492 GINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  492 GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  492 GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.260e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG I+NI+EE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  489 GINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVNAR 536          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.260e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 146
            GINVRKG +TNILEENV+QPLLV+ SAI LAAE  +MI+KIDDI   R
Sbjct:  480 GINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDITLAR 527          
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 3
Query:    3 GINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 137
            G+NVRKG +T+++EE+VVQPLLV+ SAI  A+ECVR ILKIDDIV
Sbjct:  492 GVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
The following BLAST results are available for this feature:
BLAST of BQ623410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TCPD_DICDI5.620e-1481.25T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_BOVIN1.060e-1277.08T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_AEDTR1.060e-1282.22T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_RAT1.808e-1277.08T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE1.808e-1277.08T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_PONAB2.361e-1277.08T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN2.361e-1277.08T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_TAKRU5.260e-1275.00T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_SCHPO5.260e-1272.92T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_CAEEL3.410e-1171.11T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00501 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623410 ID=BQ623410; Name=BQ623410; organism=Citrus sinensis; type=EST; length=324bp
CTGGAATCAATGTGAGGAAGGGGCAGATTACCAATATTTTGGAGGAGAAT
GTGGTGCAGCCACTGCTTGTGAGCACAAGTGCAATAACACTGGCTGCAGA
GTGTGTAAGGATGATTTTGAAGATTGATGACATCGTTACTGTGAGGTAGT
TTTGCATCCAAAGATGAAAGTGTGTTCCCTACTTATGTTTTGCGTCCTTG
TATTATCTGAATTAGTAAGCTCTGTTTTAGGATTGATTGCTGTTAAGAGT
TTTGACTTTGTTATTTTTGTTGCCAAATATTTGGTTTGAATTTGCTGTTT
TATGGTTAATTAGCAGTCGAATGA
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