BQ623414

Overview
NameBQ623414
Unique NameBQ623414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11438 contig Csv1_Contig11438:186..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.152e-63
Identity = 102/112 (91.07%), Postives = 109/112 (97.32%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 411
            +YGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNH+TGVV+ KKFG+L NWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct:   34 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145          

HSP 2 Score: 37.3502 bits (85), Expect = 1.152e-63
Identity = 17/23 (73.91%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    2 VVPRNFRXXXXXXRGEKGIGDGT 70
            VVPRNFR      RGEKGIGDGT
Sbjct:   10 VVPRNFRLLEELERGEKGIGDGT 32          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.658e-63
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 411
            +YGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CVNHETGVV+PKKFGLL NWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct:   35 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146          

HSP 2 Score: 37.3502 bits (85), Expect = 5.658e-63
Identity = 17/23 (73.91%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    2 VVPRNFRXXXXXXRGEKGIGDGT 70
            VVPRNFR      RGEKGIGDGT
Sbjct:   11 VVPRNFRLLEELERGEKGIGDGT 33          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.692e-49
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            +YGMDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CVN ETGVVEP  F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Sbjct:   33 SYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141          

HSP 2 Score: 37.3502 bits (85), Expect = 1.692e-49
Identity = 17/23 (73.91%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    2 VVPRNFRXXXXXXRGEKGIGDGT 70
            VVPRNFR      RGEKGIGDGT
Sbjct:    9 VVPRNFRLLEELERGEKGIGDGT 31          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.388e-47
Identity = 77/109 (70.64%), Postives = 90/109 (82.57%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            +YGMDD DDI M+SWTGTI+GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CVN E GVV+P  F +L NW+RE+TMED+L QLKKEM +  NRKL QP EG
Sbjct:   33 SYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEG 141          

HSP 2 Score: 37.3502 bits (85), Expect = 3.388e-47
Identity = 17/23 (73.91%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    2 VVPRNFRXXXXXXRGEKGIGDGT 70
            VVPRNFR      RGEKGIGDGT
Sbjct:    9 VVPRNFRLLEELERGEKGIGDGT 31          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.315e-34
Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 411
            +YG++  DDI + SW GTIIGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CVN + GVV+PK   +L NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Sbjct:   27 SYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138          

HSP 2 Score: 25.7942 bits (55), Expect = 3.315e-34
Identity = 11/22 (50.00%), Postives = 12/22 (54.55%), Query Frame = 2
Query:    5 VPRNFRXXXXXXRGEKGIGDGT 70
            +PRNF        GEK  GDGT
Sbjct:    4 IPRNFVLLEELESGEKSTGDGT 25          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: MMS2_SCHPO (Ubiquitin-conjugating enzyme spm2 OS=Schizosaccharomyces pombe GN=spm2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.577e-33
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 411
            +YG+ + DDI +  W  TI+GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+  V+ ETG V P K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Sbjct:   27 SYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138          

HSP 2 Score: 30.8018 bits (68), Expect = 3.577e-33
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2
Query:    5 VPRNFRXXXXXXRGEKGIGDGTC 73
            VPRNF+      +GEKG+G+ +C
Sbjct:    4 VPRNFKLLEELEKGEKGLGESSC 26          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: MMS2_YEAST (Ubiquitin-conjugating enzyme variant MMS2 OS=Saccharomyces cerevisiae GN=MMS2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.183e-29
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 411
            +YG+ D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct:   27 SYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137          

HSP 2 Score: 29.261 bits (64), Expect = 2.183e-29
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 2
Query:    5 VPRNFRXXXXXXRGEKGIGDGTC 73
            VPRNFR      +GEKG G  +C
Sbjct:    4 VPRNFRLLEELEKGEKGFGPESC 26          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V1_HUMAN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V1_BOVIN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 1
Query:   76 AYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 402
            ++G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PPSVRF +R+NM+ V+   GVV+P+   +L  WQ  ++++ IL +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEG 142          
The following BLAST results are available for this feature:
BLAST of BQ623414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1C_ARATH1.152e-6391.07Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UEV1D_ARATH5.658e-6390.18Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1A_ARATH1.692e-4973.39Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UEV1B_ARATH3.388e-4770.64Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UBE2V_DICDI3.315e-3453.57Probable ubiquitin-conjugating enzyme E2 variant O... [more]
MMS2_SCHPO3.577e-3354.46Ubiquitin-conjugating enzyme spm2 OS=Schizosacchar... [more]
MMS2_YEAST2.183e-2951.79Ubiquitin-conjugating enzyme variant MMS2 OS=Sacch... [more]
UB2V1_HUMAN3.238e-2545.87Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo ... [more]
UB2V1_BOVIN3.238e-2545.87Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos t... [more]
UB2V1_MOUSE5.523e-2545.87Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00505 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00505 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623414 ID=BQ623414; Name=BQ623414; organism=Citrus sinensis; type=EST; length=671bp
GGTGGTCCCTCGGAACTTCAGATTGTTGGAGGAACTTGAACGCGGAGAAA
AGGGTATTGGAGATGGCACCTGTCAGCGTATGGAATGGATGATGGAGATG
ACATTTACATGCGCTCTTGGACTGGCACCATTATCGGTCCTCACAATACT
GTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTA
TCCAGAGAAGCCACCAAGTGTTCGTTTTCATTCACGAATCAACATGACTT
GTGTTAACCATGAAACTGGAGTGGTGGAACCTAAAAAGTTTGGACTTCTT
GTGAATTGGCAGCGAGAGTACACCATGGAGGATATACTCACACAACTGAA
AAAGGAGATGGCAGCCCCACACAATCGGAAGCTGGTTCAACCTCCTGAGG
GTACCTACTTCTAGCTTCTAAGATCATATAGGTATCATGGGGCTTATTGC
ATATTACAATATGCAATATATAGATTGTATTCCTGTGTTCATCCTGTTGA
TGTTAAGAACATAGAAGGAAATGCCTGAAAGGGCCTTTTCCAATTACATC
TCCATGGCTTCATCATCGGTTTGGCTCTTTCTTTTTCTTTTTTCAACTGT
AATGGAAGGATGCTGTTTGATTAATGGGATTTTCTGTGTGTCAAATATTT
AAAAATAGAAAAATCCATCAT
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