BQ623419

Overview
NameBQ623419
Unique NameBQ623419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623419_ssr2 microsatellite BQ623419_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig960 contig Csv1_Contig960:100..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623419 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 38/86 (44.19%), Postives = 43/86 (50.00%), Query Frame = 2
Query:   80 TCPIDTLKLGACVDVXXXXXXXXXXSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXXPIALEVLI-DCGKHPPPGFQCPA 334
            TCPID LKLGACVDV           SAK  CCP+L G                         PIAL+VLI DCGK+PP  F+CP+
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345          
The following BLAST results are available for this feature:
BLAST of BQ623419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC2.286e-1244.1936.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00510 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00510 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623419 ID=BQ623419; Name=BQ623419; organism=Citrus sinensis; type=EST; length=507bp
GCCACCACCACCAAGTGGAACACCGTGTCCTCCGCCGCCGCCACCAAAGG
TGAGACCGTACCCTCCACCACCATCACAAACTTGTCCCATTGATACTCTC
AAGCTTGGTGCATGCGTCGACGTGTTGGGCGGTCTAATACACATCGGTAT
AGGCAGCAGTGCAAAGGACGCTTGCTGCCCCGTGCTGCAGGGGCTACTGG
ACTTGGATGCTGCATTATGTCTTTGCACCACCATTAAACTTAAGCTTTTG
AATATCAATCTTATTATACCGATCGCCCTTGAAGTGCTTATTGACTGCGG
CAAGCATCCGCCGCCCGGATTCCAGTGTCCTGCCTAATTGGTGACGCTTT
CCAGCCATGCAATTGATGAATGCGACTTGTTTGTTTTGGAGATTTTGTCA
AAGATAATGACATGTAAGTGCATAAAGTGGAAGTACTTCATGATATCGAA
GTTTGTCTTAATATATGTTTTGTTCCTCTTGTGCATATCAAACCAATTAT
CTTTGGA
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