BQ623443

Overview
NameBQ623443
Unique NameBQ623443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7627 contig Csv1_Contig7627:469..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623443 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.397e-46
Identity = 84/102 (82.35%), Postives = 94/102 (92.16%), Query Frame = 3 
Query:   42 CATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 347
            CA GIP+S FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLLLIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct:  228 CANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329

HSP 2 Score: 31.5722 bits (70), Expect = 2.397e-46
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 2 
Query:    2 KSPSGRKYDAVIHLCN 49
            KSPSG+KYDAV+H  N
Sbjct:  215 KSPSGKKYDAVVHCAN 230
[Close]
BLAST of BQ623443 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.976e-40
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:   45 ATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 347
            A+GIPWSTFEPNL   GKVID+TPGP+AM+TFA KKLTFSKKQLVPLLLIPK  N +++V LVKE KLKTVI+SKHPLSK EDAW+  + GHATGKII+EP
Sbjct:  229 ASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP 329

HSP 2 Score: 25.409 bits (54), Expect = 2.976e-40
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:    5 SPSGRKYDAVIH 40
            SPSG+KYD V+H
Sbjct:  216 SPSGKKYDYVVH 227
The following BLAST results are available for this feature:
BLAST of BQ623443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QORH_ARATH2.397e-4682.35Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL2.976e-4076.24Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00534 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00534 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623443 ID=BQ623443; Name=BQ623443; organism=Citrus sinensis; type=EST; length=532bp
AAAGAGTCCATCTGGTCGAAAATACGATGCAGTGATCCACCTGTGCAACA
GGGATTCCCTGGTCTACTTTTGAGCCTAATCTGGGCACAAATGGGAAGGT
GATAGATATCACTCCTGGCCCTAGTGCGATGCTGACTTTTGCTTTGAAGA
AACTTACCTTCTCCAAAAAGCAGCTGGTACCACTGCTGCTGATTCCCAAG
CGTGAGAACCTAGATTTTCTAGTTAAGTTGGTGAAGGAAGGAAAGCTTAA
GACAGTAATCAACTCAAAGCATCCCCTGAGCAAGGCAGAAGATGCTTGGG
CTGAGAGTATTGATGGCCATGCTACAGGGAAGATCATTGTGGAGCCATAA
CTTCATATGATTTGGTTTATTGTTGAAGTTTTATGTCACTGAAGAATTTG
TCTGTAGGACAAAGCTTATGGCAAATGTGCTGTTTCATCGTGTAATTACT
TTCAACCAGATGCTGTGATTAGATCGTTTGTGTGTATTAGACGATATGTT
GTCCAAGTGATATGTGGATTTGGGTAAATTAT
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